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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -8.330sp|Q9Y267|S22AE_HUMAN Solute carrier family 22 member 14 OS=Homo sapiens GN=SLC22A14 PE=2 SV=4  ali follow..  12  215.....................LLSLLGLIIFGFGTAFMNSFHLYLFFRFGISQSVVGYAISSISLATEWLVGEHRAHAIILGHCFFAVGAVLLTGIAYSLPHWQLLF---LVGGILVIPFISYIWILPE-------SPRWLMMKG---KVKEAKQVLCYAASVNKKTIPSNLLDELQLPRKKVTRASVLDFCKNRQLCKVTLVMSCV---FTVSYTYFTLSLRMRELGVSVHFRHVVPSIMEVPARLCCIFLLQQIGRKWSL-----------------------AVTLLQAIIWCLLLLFLPEGEDGLRLKWPATELKSMTILVLMLREFSLAATVTVFFLYTAELLPTVLGLGLVSLAS-----VAGAILSIISQTPSLLPIFLCCVLAIVAFSLSSLLPETRDQPLSESLNHSSQIRNKVKDMKTKETSS. 591
2 -7.770sp|P43681|ACHA4_HUMAN(removed signalp:1-26) Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2  ali   12  24.....................................................................................................................................................................................................................................................................................QLDFWESGEWVIVDAVGTYNTRKYCAEIYPDITYAFVIRRLPLFYTINLIIPCLLISCLTV-LVFYLPSECGEKITLCISVLLSLTVFLLL--ITEIIPSTSLVIPLIGLLFTMIFVTLSIVITVFVLNVHHRSPRTHT.................. 163
3 -7.710sp|A6NKX4|S22AX_HUMAN Putative solute carrier family 22 member ENSG00000182157 OS=Homo sapiens PE=3 SV=3  ali follow..  15  161.....................VASLVLTTGLGASEALAASFPTLLVLRLLHGGTLAGALLALYLARLELCDPPHRLAFSMGAGLFSVVGTLLLPGLAALVQDWRLLQGLGALMSGLLLLFWGFPALFPE-------SPCWLLATGQVARARKILWRFAEASLEENSLATATELTMLSARSPQPRYHSPLGLLRTRVTWRNGLILGFS---LVGGGIRASFRRSLAPQVPTFYLPYFLEAGLEAAALVFLLLTADCCGRRPVLLL-----------------------GTMVTGLASLLLLAGAQYLPGWTVLFLS--LGLLASRAVSALSSLFAAEVFPTVIRG-------AGLGLVLGAG-----FLGQAAGLHGRQGFFLQQVVFASLAVLALLCVLLLPESRSRGLPQSLQDADRLRRSPLLRGRPRQDHL 540
4 -6.990sp|Q96LP4|YS017_HUMAN Putative uncharacterized protein FLJ25328 OS=Homo sapiens PE=2 SV=1  ali follow..  12  6.........................................................................................................................................................................................................................................................WLFDSNFCSAVEIILEPEKKIPNSTLHFCEELVP-NSGSLFGKNICCGKQKSLLELDRDGEFQPERPKNSCPALLNAISRRTSIF----------PPPTSLLLPVTLASSQCCWATSGSAGGRGIAPTPGSPWPCSRAGGA----------LGTSLDTHPAGSRACRAVHQLAGESPTPRQARR. 200
5 -6.860sp|Q16799|RTN1_HUMAN Reticulon-1 OS=Homo sapiens GN=RTN1 PE=1 SV=1  ali   13  142...........................................................................................................................................................................................................LLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK--HPFKAYLELEITLSQEQI---------QKYTDCLQFYVNSTLKELRRLFLVQDL-VDSLKFAVLMWLLTY---------------------VGALFNGLTLLLMAVVSMF------TLPVVYVKHQAQIDQYL..................................... 300
6 -6.840sp|O75298|RTN2_HUMAN Reticulon-2 OS=Homo sapiens GN=RTN2 PE=2 SV=1  ali follow..  11  348...........................................................................................................................................................................................................LLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAVHR--NPFQAYLDVDLTLTREQT---------------------ERLSHQITSRVVS--------AATQLRHFFLVEDLVDSLKL--ALLFYILTFVGAIFNGLTLLILGVIGLF------TIPLLYRQHQAQIDQYVGLV-LSHIKAKIRAKIPGTGALASAAAAVSGSKAKA. 544
7 -6.810sp|O95264|5HT3B_HUMAN(removed signalp:1-21) 5-hydroxytryptamine receptor 3B OS=Homo sapiens GN=HTR3B PE=1 SV=1  ali follow..  10  38...................................................................................................................VYLDLFVHAILDVDAENQILKTSVWYQE--LSWNSSMFDEIREISLPLSAIEFVDIERYPDLPYVYVNSSGTIENYKPIQVVSACSLETYAFPFDVQNCSLTFKSIL--------------------------------HTVEDVDLAFLRSPEDIQHD---KKAFLNDSEWELLSVSSTYSILQSSAGGFAQIQFNVVMRRHPLVYVVSLLIPSIFLMLVDL-GSFYLPPNCRARIVFKTSVLVGYTVFRVN--MSNQVPRSVGSTPLIGH---TICMAFLVLSLAKSI............................. 300
8 -6.770sp|O75751|S22A3_HUMAN(removed signalp:1-33) Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1  ali follow..  12  153.....................LLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQ---LAITLPSFLFLLYYWVVPE-------SPRWL------ITRKKGDKALQILRRIAKCNGKYSNYSEITVTDEEVSNPSFLDLVRTPQMRKCTLILMFA---FTSAVVYQGLVMRLGIIGGNLYIDFFISGVVELPGALLILLTIERLGRRLPF-----------------------AASNIVAGVACLVTAFLPEGIA-TTVATLG-RLGITMAFEIVYLV-------------NSELYPTTLGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDVEKLGSPHSCKCGRNKKT. 516
9 -6.750sp|Q9BY07|S4A5_HUMAN Electrogenic sodium bicarbonate cotransporter 4 OS=Homo sapiens GN=SLC4A5 PE=2 SV=2  ali   21  191.............................................................................................................................................................................................................................................................................................TGRFFG-GLCLDIKRKLPWFPSDFYDGFHIQSIS-----AILFIYLGCITNAI--------TFGGLLGDATDNYQGVMESFLGTAMAGSL-FSGQPLIILSSTGPILIFEKLLFDFSKGNG............................ 299
10 -6.740sp|O15245|S22A1_HUMAN(removed signalp:1-38) Solute carrier family 22 member 1 OS=Homo sapiens GN=SLC22A1 PE=1 SV=2  ali follow..  12  142.....................LGTVLVNAVSGVLMAFSPNYMSMLLFRLLQGLVSKGNWMAGYTLITEFVGSGSRRTVAIMYQMAFTVGLVALTGLAYALPHWRWLQ---LAVSLPTFLFLLYYWCVPE-------SPRWLLSQKRNTEAIKIMD---IAQKNGKLPPADLKMLSLEEDVTEKLSPSFADLFRTPRLRKRTFILMYL---FTDSVLYQGLILHMGATSGNLYLDFLYSALVEIPGAFIALITIDRVGRIYPM-----------------------AMSNLLAGAACLVMIFISPDLH-IIIMCVG-RMGITIAIQMICLV-------------NAELYPTFVGVMVCSSLCDIGGIITPFIVFRLREVWQALPLILFAVLGLLAAGVTLLLPETKGVALPETMKDAENLGRKAKPKENTIYLKV 508
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.