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Query: gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKRLast
1 -3.390PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  10  70.....................................................................................................................................................................KAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQAPSASGKGILVEPIHDEIRKEVTIQMKAY---KKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNN--------TGTGI---LQNIMDSDGTGLICEA----EADTLSTAIGS--DHGHWSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLSVLISGTPSQVQTFDGSYSRQLYYNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCR------------------MSEVAVLRALESPQPYDFKTSPTSP............ 394
2 -3.130HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  11  1.................................................................................................................................................................................................................................MSREKRKAKKEAEKRLSTRQFIGAKEITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQME-----PVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQNVTTE................................................................................................. 184
3 -3.070PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  12  12........................................................................................................................................................................................................................LVLTMCSAFSLKKGHSKTVYA-AASFTDTVV----------YFTDIQILDSAKVSKEGFLTHRDLYSYQL-YVEDNGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRNTTVT................................................................................................................................................................................ 119
4 -2.210PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  14  2.........................................................................................................................................................................................................................................................PKKTDIAIAGPSFEDLKQTNAHGAEYWSARELQP-SQWRRFEQAIERAITSCKESGNSPEH-QVVDDYHLSRFACYLIADPRKPEIQKYFAIQTRRQELSDQAAADLERLELRKQTAEEFKALSGAAQQ----------------VQSKMFGVFHDAGYKGLYGGLGRDAIKQRKAIPDKDNLLDRMNATELAANQFRMTQTRDKLARSQAQAIQTHEQVGREVRAAIQRIGGTLPEDIPAAEHIKEVEKRLKSATPR 273
5 -1.970HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  4..............................................................................................................................................................................................................................................EVHYFDELLERIRDIRASE-KRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEHTAPELIAKRADASKDNMGLTSFKGVK--------VRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPHMADWESKLGDFLRFNGREV---------------ENFGTVKREVAEKLALEQYE.................................................................................. 173
6 -1.850PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  10  112.........................................................................................................................................................................................................................................................VQIKLAPVNAPYFDGAKLLIAADCTAYA---------YASFHEKFIKGHVTLIGC--PKLDSVDYSEKLTEIIRRNTIVRMEVPCCGGLEMAAKKALQDSGKFIP----------WQVATISIDGRIL.................................................................................................................................. 223
7 -1.770PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  8  2...........................................................................................................................................................................HNFKEKI-----QFSKIRSRSCPFMQQNKFRKAIVFGKFAI--VKKVYEVNDGFNIGSG-------LLAKFIKTLVMYFPFSILYFV------FDLILFNLIEFWSGNNPVGYN--KYVKAYEENGEKLLLSYSDFGKRLDIQFAK.............................................................................................................................................................................................. 149
8 -1.750PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  20  197.............................................................................................................................................................................FSSIFLSFISIFALTITFA--------YNSTFL---------NLAQIVRINTIRPNPNPN----PNEIFNFDLNNLPIEN------------GLLTVEAIWFLQSK-----ELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFP-----LGLFVEKFFKDDVEV--PALYFVVNNSTKNIFSSVGI.................................................................................................................................... 360
9 -1.680PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  9  1.............................................................................................................................................................................................................................................................................MTDSLFWA------KNQFHGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANL--SIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQ--QSLLLLCYDHVRLEHHLSHPGIRT-----LLHKAGYKDDADCEGMLLELRSR--SFPHEIGLFIGYPAKDV----AAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILAR 230
10 -1.660PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  6  11....................................................................................................................................................................................................................NMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMEN-QVITQKEVDAVIAIMGQPEDY............................................................................................................................................................................................................................. 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 9 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.