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Query: gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPGLast
1 -5.380PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  10  45..................SQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDD-SNEPIVDGEAAAKEIISHNEAFVWPVRLVESL-SGKTKTTATSNEVDLDQDVDLSML-----------------SDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEARSNEKLNREHVYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANFLGVNVTLKLNGEDAGK--VDGS--SVLQWISFADPANPTLDTSQISSWAAELA-FNTVGSTRWWTRADGKQC-------------AVEGGDFGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK........................................... 362
2 -2.680PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  8  44.....................................................................................FNLTENNIYKSKVIKDIDSNIGQLLKTDAKFYAIHVSPSE-KELQAMGNTEHEQAESMKRYIREVFIPEYAKNFNK--------GLSEADIKFYGK-----IHFNRSHSDNELNMHCHLIVSRKDQSNKKKLSPLTNHKNTKKGPIKGGFDRKSL------FQQAKLGFGRLF-NYDKQLTESFEYYNTMKNGSISDQLNMQERQIASEKENKQTGLHADKQNEQVENKVAYKQGN................................................................................. 258
3 -2.440PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  6  18...................KWMFQVMGLEYDKALKLAE-ELPEQFFPETATWGLCWHEIKWGLPVRQAIYEKRDYHSPMTP--YIMERYLENATGFTVHIAHDAGPLKYKPPHPNVFKAFFNGDGTLDSKKVRKLIDKLKESHTTYFVNDYSMFEIVFSEKFMVSNIGLLFKIPFWKARRFDGSELWDGSHLMDAAIEYEMRLGVKYKEGEFRIAETLDIERMTARAKVPLSEKMHIEKQTVSAKAFNWQSLFFDGSV------------------------PMDGNLLMNYCRADNKTTAN--KIPVASISESYGNATCTVKRNL--------FDGSLKMNGSRLLNSLN................................................... 326
4 -2.140PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  12  26..........................................................................................NKVGNDNISDDKEGEEELLPGSEPQHQLPTFPENDWPEF--------------LQRIIKAGSSPIQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMK------AYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGILQN--IMDSDGTGLICEAEADTL----------STAIGSDHGHWSDTLRKAFDHDRLSYNRRTD------EYREVKKSYLSVLISGTPSQVQT................................... 265
5 -2.110HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  13  23.......................................................................TKHSNGEIQRTIQNCITILQNDHVLADAIRLNLLSERIDIVKPPRSGKTLNDTDMKYILRRMEKYGISSEKKIESAIRIVGNENPYHPIRDYLNGL........................................................................................................................................................................................................................................... 121
6 -2.040PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  11  33..........................TIWGEVVDEATGKRVLTDQ--GSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQN---------TKIFKGEYNVRIDGPFIPLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGVIKAQVRVTRGVSDE.................................................................................................................................................................................................................................................. 165
7 -2.020HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  7  2..........................................................................................................................AVSAPPILKTLKTKDMIAKTILQQI-KRFTAMTGSRDFIDMGNGLRMSLARNKTSA-GADLYNMRFYRRTFSKKTFECKTKDIAVHEGIDMLEEMFTMVTGLYTRF.............................................................................................................................................................................. 118
8 -1.930PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  16  29............................................................................................................................................................................................................ILNSSAVKNAVTSVTGGKAVTFENLQGTWMYVNPALQLEGDNASLAATEAEKKMKEYCA-IVEGVFNYVFNSDSTFTSALKRGSLVSPEDKTVTLRYTVGNKKLTVST--------TAHVVLSGNELTLLFNADKLLKFLSTVSS..................................................... 179
9 -1.850PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  18  49........................................................................................................................................................................................................................................................................LPQVVKSTLSKDYEGT--IVKEAFVAEKENGKV-------KIIVTAIKEDQSTEEITVLLNEKGEPVN...................................................................... 108
10 -1.820HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  11  17....................................................................................................................................................................................................................................................TDLDKIEDFLDDTFSEFGDSVDAEFSSRWVYPEEEIKKLVESLE-------------DKDKVYIKILTYEFEDEYVSFRIFSQGE-----WKVKLVTE............................................................ 100
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.