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Query: gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYGLast
1 -4.780PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  14  32............................................................................SSAVKNAVTSVTGGKAVTFENLQGTW-MYVNPALQ-------LEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGV----NYVFNSDSTFTSALKRGSLKG-----TY. 125
2 -3.650PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  20  102.............................................................................................ERPSQLTQWP--VQIKLAPVNAP-YFDGAKLLIAADCTAYAYA-KLDSVDYSEKLTEIIRRNDIQSVTIVRMEVP................... 189
3 -3.490HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  19  1......................................................................................................................LEDGD-FVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVEYRDTY. 67
4 -2.740PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  9  23...........................................................................................ETEEGSVVRIFP------LTEEIENVEWLPGAIVLLTQDELKELDTNSPLVNAPQNYSKTSAEFYYNSTR.......................... 86
5 -2.690HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  104....................................................................THEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTADVK.......................... 196
6 -2.490HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  7  4.....................................................................................................W--IIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKL........................... 60
7 -2.390PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  9  99..........................................................................AIGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYS----------YLEGRLL.......................................... 159
8 -2.390PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  8  116............APSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLEAEADTLSTAIGSDHGHWSDTLRKAFDDRLSYNRRTDQEYREVKKSYLSV----------LISGTPSQVQTFIPTAEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIF. 304
9 -2.210PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  11  49...................................................................TSDLERRRYLILRRKTRKVWPYAKLAS--ERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLHRQTGVTTFQLIKLRSGWRAFWYDTTAGLFDIELKSEY. 167
10 -2.050HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  12  165......................................................................EKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKGLIIIIGPEKNRIRRFFKICLSIHIPI------KSLQKITFRYGTCPCCR------------DAY. 270
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.