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Query: gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKNEARRSALAPDHGTVVCDPLRRLNRMHATPEESIRIVAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQGAPTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDVLast
1 -2.990PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  41................................SAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSA--SLQLSSFDRSG----------GDFDISTGNKNGTGGCLAPGGAGCVIAEHGAGE-IRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADP-----------------------------------------AVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLT------------GLRLRIEFDGR-------------------------TTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMP-FARSARVSLANGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIR-GQRTRTAFSDNAPYFLEGDGAASPQWYGTGTEDL--DPLNGQPDQRTATAGCADYCVAVYRIMP------------AEAIGYHSALRFG-GKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL........................................................................................................... 559
2 -2.890HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  19  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQTNY-KQNQEKAWQVIKNTNIIQIWEDAGAKIN----VGSLRTGLLMKHRDIDFH-IYSSPLNLTDSFQAMARLAENPSI--------------KRIECANLLHTAEACIEWHAWYQNEENELWQMSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKEYYQAVIRDGVRDYSGFKE........... 188
3 -2.620PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  10  56.PAADQPAASQKATSESTVQSGEGEKEVFKPASDDKPKESIQDYEQEYENQLKDILETIIGVEDVSI---VNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVLV---------------VAQGVDNIKKTIIEAVTRVLDVPSHR...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 219
4 -2.520PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  13  5..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVGSLYLCTTAFLPLGLPASDDFWSQPDA.......................................................................................... 118
5 -2.500PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  18  12..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSMEISEENLVTIEKYSLFQHLIDSNGI---DEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYH............................................................................................................................. 76
6 -2.470HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  2.................................................DEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMT---------YPFDDEVGILLNGNGEGLPLNLYDDHGQVYDAIAGTFLVVGLTEDDFTSLT--------EQIEKFKEKYQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 115
7 -2.330PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  47................................................................................LQQFIGELKESSFIMEQEKDTGQL-FMITDQGKKTLTYFISRIPEEKRLKIDHLLNIKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEIFNLKLSVGNVKQAKDMCEKWRSD.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 161
8 -2.170PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  5....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DSRHSKYVIRIICEGEKTEPLFFTSLCDKLLD----DRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAF------EAEKLIDDKKVNIAFSSRSFEY........................................................................................................ 147
9 -2.140HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  8............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIEN------VMICGVVAGNISSVLDTAYGNIIIAIYGLCVGIFVGCIAVALILHTFPIIYKRMKLRAGLG-VISMAIGK.................................................................................................... 142
10 -2.120HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  11............................................................................................................................................................................................................................................................................................................................................................................................................................................LQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSLNQAIEVFRTEDQDIEHNFEFGRTKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSYKMMFTMKAKNNRLAYLRDLFY.................................................................................................................................. 181

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.