current user: public

If you have questions about the server, please let us know.

Query: gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180
# Score Template Links and tools%idFirst MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITISLast
1 -3.110PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  20  5.........................................................................................KGGPEAHFKRYIKEHVKGKKTGLFITLGADPAGEHGESMLKVGRELLNEGGNEILAEFIGAIDPKVIEEMKEMAAKMGDKAIHLIT....... 92
2 -3.100PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  72IHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNIETATELVSVFTLLNDAVAKGSNEN---TGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSH................................ 222
3 -2.820PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  295...............................................................................................TYEKEYR---------IVLNRLMDYEIKEEDRKLKYDFNC----KGVIFGIKTPQNKKDEIIEI--IINKCHENNILDFEFYQAFYC 367
4 -2.670PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  98TKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGGLFDIELKSEYNPVNNREDFLIEDILQRSFQRN.................................................................................................... 189
5 -2.600PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  13  23................................................................FYCNFLKGVFLLRIAVVDGQGGGIGK---------HITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIDAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVT 149
6 -2.550PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  11  1..................................................................................................................MYTIQANPSGTRSMEISEENLVTIEKYSLFQHLIDSNGIVDEAVLEKLKLNIRS.............. 54
7 -2.170PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  14  8.................................................................FERLSRSSFRRRFRLGVQEQQ---LANKGMETILEHGKDFIAQRLAPAEIPNDGKQTKGHPVFLAQHATG-IEKWHRI-GKSLSQEEQAYILDV....................... 107
8 -2.040PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  10  43............................KITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYK-----IVTAIKEDQSTEEITVLLNEKGEPVNEK.................................................................................. 110
9 -1.750PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  31.............................LLHDMSKYSPTEFLVGCRYYKGYMSPNNAERADRGYSSAWLHHKGRNKHHLESKPGDDKTHTKMEEMFIDRVSASKNYQKEKYTDKSALE-EKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKK----EVLKGHIP............ 185
10 -1.700PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  14  133...........................................................................................SRVVTP-DDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETD-------LFEIFSSQENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPV 216

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 9 1 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.