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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -4.290PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  7  1....................................................................................................................................................................................................................................................................................................ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMK-------------TVMKTNTAVMGMM-VIMMPFFFLAMYEKNGQPL-------EVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVR. 120
2 -3.490PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  14  134.............................................................................................................................................................................................................IRETELKESFV-----ISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFND-----IDSVYPLFLCLLMAFSATVYE-----SMQVFVPDTWEHFYFN---PTLSPFKVPFILSVFLLSIWLFLIVALAVLDDLFRQLTPAAAVFYLLGLM-----SSCIFCYFFFILMTHIYIGYLFLAFFIWVFA................................. 310
3 -3.350HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;  ali follow..  6  4..............................................................................................................................................................................................................................................................................................................................................FHSKKVMCIQQEIYARMIMYNFVQMITSHV-ANFSVATHMC--------------LFYREKTTSPNLETIIAKNLIPIRPDRHRERNLKVKTFHGFLYRV 101
4 -3.080HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  16  70....................................................................................................................................................................................................................................................................................................................FILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLLALWLISFILCG............................. 180
5 -2.960PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  13  3............................................................................................................................................................................................................ILNNKNKRTSILCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFE-GEGTLMDNGITFLPNDRYLLENEKFRLYYTAQGDE-------------------NFIVVVEDNFGNSYELEFDFNNRDDGVITVVPIGNFKPLT........................................................ 167
6 -2.890PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  18  4...................................................................................................................................................................................................................................................................................................................................................................LLPLEAMEYEINKG-AGNPLEFKGLKSQYLFIFAGGLVAVLLVVVILYIAGVNQ......................... 56
7 -2.780HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  15  10...................................................................................................................................................................................................................................................................................VLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRILWTAVC---------VVIGLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILL........................................................... 102
8 -2.700PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  9  1............................................................................................................................................................................................................MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCV---IAEDHG--GEVDSIWLIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANAGESPGGDYIKVP-----MPY----RRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRA 237
9 -2.390HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  13  1.....................................................................................................................................................................................................................................................................................................................MFSLLLSTFAMMGLTFVIGFFVAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEY--VSPGESER.......................................... 106
10 -2.340HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  14  53..........................................................................................................................................................................................................................................................................................................................................................................QFIIGVKGLAGFLGTSVSTVATLQCGKVVIFELPKVIEILRVSDKKNKFNVKSKKYNGKESN.......... 125
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.