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Query: gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPGLast
1 -6.470sp|Q04912|RON_HUMAN Macrophage-stimulating protein receptor OS=Homo sapiens GN=MST1R PE=1 SV=2  ali   9  2.......................................PSANLVPLKPEEHAIKFEYIGLGAVADVGINVTV---GGESCQHEFRGDMVVCPLPPSLQLGQDGAPLQVCVDGECHILGRVVRPGPDGVPQST............................................................................................................................................................................................................................................................................. 93
2 -5.360sp|Q2LD37|K1109_HUMAN Uncharacterized protein KIAA1109 OS=Homo sapiens GN=KIAA1109 PE=1 SV=2  ali   11  4.............................................................................................PCWGLDIVCGKGTDFNYGPWADRQRDCLWKFFFPPDYQVLKVSEIAQPGRPRQILAFELRMNIIADATIDLNAVHVNVGAGSYLTVEENGYTPAIKQLLHVDATTSMQYRTLLEAEMLAFHINASYPRIWNMPQTWQCELEVYKATYHFIFAQKNFFTDLIQDSPPDIFSFVPYTWNFKIMFHQFEMIWAANQHNWIDQENVYLAACGETLNIDFSLPFTDFVPATCNTKFSLRGEDVDLHLF.................................................................. 270
3 -4.350sp|Q6ZTY8|CL063_HUMAN Putative uncharacterized protein C12orf63 OS=Homo sapiens GN=C12orf63 PE=2 SV=2  ali   17  10.................................KDEITLSMLKSMLLMEAEDRLNCSAGELEIVVEARLAAVALQRHRAAYSAAIVFSTLTLLQDSK................................................................................................................................................................................................................................................................................................................. 88
4 -3.980sp|Q9Y664|KPTN_HUMAN Kaptin OS=Homo sapiens GN=KPTN PE=2 SV=2  ali   12  1.................................................................................................MMGEAAVAAGPCPLREDSFTRFSSQSNVY-GLAGGAGGRGELLAATLKGKVLGFRYQDLRQKIRPVAKELQFNYIPVDAEIVSIDTFNVGITFIKDSGDKGSPFLNIYCDYEPGSEYNLDSIAQSCLNLELQFTPFQLCHAEVQ-NEGLHQFEEQPVENLFPELTNL-----SSVLWLDVHNFPGTSRRLSALG---------CQSGYVRVAHVDQRSREVLQMWSVLQDGPISRVIFSLSAAKETKDRPLQDEYSVLVASMLEPAVV..................................... 286
5 -3.980tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1  ali   15  1.................................................................................................................................................................................................................................................................................................................................ISDVEEGEDAMTGDTDKYLPQDLKELGDDSLPAEGYMGFS......................................... 41
6 -3.930sp|Q05996|ZP2_HUMAN Zona pellucida sperm-binding protein 2 OS=Homo sapiens GN=ZP2 PE=2 SV=1  ali   7  28.....................LFFALVTSGNSIDVSQLVNPAFPGTVTCDEREITVETKKWHASVVDPLGLDMPNCTKLTLRATYDNCTRRVHGGHQMTIRVMNNSAALRHGAVMYQFF---PAMQVEETQGLSASTICQKDFMSFSLPRVFSGLADDSKGTKVQMIEVGDGARAKTLTLPEAMKEGFS---------LIDNHRMTFHVPFNATGVTHYVQGNSHLYMVSLKLTFISSQAICAPDPVTCNATHMTLTIPEFPGKLKSVSFENQNID----VSQLHDNGIDLEATNGMKLHFSKTLLKTKLSEKCLLHQFYLASLKLT........................................................................... 342
7 -3.680sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=3  ali   12  1........................................................................................................................................................................................................................................................................IPEEQRLNLKIQICRALQAAEQPGLFSEEVEAVNITQEPRHIMCMYLVTSAKSVTEEVTIIIEDVDPQMANLKMELRDALCAIIYEEIDI................................................ 101
8 -3.550sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   7  10..................................................................................................................................................................................................................MEKLSVMLSTRTNHIETLGKLREELGLCERTFK--QYMLNAGLAKVVSLRLQEIHPECGPCKTKKGTDVMVRCLKLL................................................................................................................... 87
9 -3.520tr|E9PJL5|E9PJL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=C12orf63 PE=4 SV=1  ali   18  6.................................KDEITLSMLKSMLLMEAEDRLNCSAGELEIVVEARLAAVALQRHRAAYSAAIVFSTLTLL..................................................................................................................................................................................................................................................................................................................... 80
10 -3.510tr|Q5QPA5|Q5QPA5_HUMAN Mitochondrial ribosomal protein S18A (Fragment) OS=Homo sapiens GN=MRPS18A PE=2 SV=2  ali   13  31.................................................................................................................................................................................................................................................VDIRSVNYTHHPMPT------FPLPWAFPLAPSELQRELQRLSPLPRHSG............................................................................................................... 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.