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Query: gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDDPGSGFTTVWNAVVSELNGDPKVDDGPSSDANLSAPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFTERPHNTDSATAGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKRLast
1 -112.0002z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA  ali model follow..  31  1...........MKERILQEIKTRVN---------------RKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSKAVKVVLGNDATFEITYEAFEPHSSYSEPLVKKRAVL--------------------------------------------LTPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIKPNRKAMDPIDELIEIVAKVTGVPREEILSNSRNVKALTARRIGMYVAKNYLKSSLRTIAEKFNRSHPVVVDSVKKVKDSLKGNKQLKALIDEVIGEISRRALS 439
2 -102.0001l8q_A mol:protein length:324 Chromosomal replication initiator protein dnaA  ali model follow..  35  1....................................................................................................................................................................KDFLNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFE---------------GLERKERKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEKQAFDK... 322
3 -53.7003bos_A mol:protein length:242 Putative DNA replication factor  ali model follow..  21  3.....................................................................................................................................................RSNRVTQHPPLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDG--VQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHASI---------STALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR........................................................................................................... 241
4 -53.3005x06_E mol:protein length:253 DnaA regulatory inactivator Hda  ali model follow..  22  2..............................................................................................................................................GSSSSGLVPRGSHMNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQE---HSGYIYLWAREGAGRSHLLHAACAELSQR--GDAVGYVPLDKRTWF---------VPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK........................................................................................................... 246
5 -40.7002kjq_A mol:protein length:149 DnaA-related protein  ali model follow..  24  2.....................................................................................................................................................................GSHMDYPSFDKFLGTENAELVYVLRHK-------HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASM--------------PLTDAAFEAEYLAVDQVEKLGNEE--QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKP............................................................................................................................................................................... 143
6 -39.0003pvp_A mol:protein length:101 Chromosomal replication initiator protein dnaA  ali model follow..  97  2.......................................................................................................................................................................................................................................................................................................................................................................................................................PHMISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQRSKR 101
7 -35.9001j1v_A mol:protein length:94 Chromosomal replication initiator protein dnaA  ali model follow..  38  1..........................................................................................................................................................................................................................................................................................................................................................................................................................VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS.... 94
8 -22.5003ecc_A mol:protein length:185 DNA replication protein DnaC  ali model follow..  16  6..........................................................................................................................................................................NANLDTYPKNVSQNRALLTIRVFVHNNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREEELGENVVSKIEMNELLVIKGSDLR........................................................................................................................................................................... 185
9 -20.4005he8_A mol:protein length:174 Helicase loader  ali model follow..  18  3....................................................................................................................................................................................ADRLDVAMAADDICTA-GEQVKGLYLYGPFGTGKSFILGAIANQLKSK--KVRSTIIYLPEFIRTLKGGFKDGSFEKKLHRVREANILMLDDIGAEEVTPWVRDEIGPLLHYRMVHELPTFFSSNFDYSELEHKAARIIERVSLSTPYFLSGENFRNN......................................................................................................................................................................... 174
10 -19.7002w58_A mol:protein length:202 PRIMOSOME COMPONENT (HELICASE LOADER)  ali model follow..  20  23............................................................................................................................................................................SLSDVDLNDDGRIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDFGPILQYRMFENLPTFFTSNFDMQQLAHKAARIMERI......................................................................................................................................................................................... 187
11 -19.1002qgz_A mol:protein length:308 Putative primosome component  ali model follow..  15  120..........................................................................................................................................................................HIHLSDIDVNNASRAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDELQVILQYRMLEELPTFFTSNYSFADLERQAKRVMERVYLAREFHLEGANRRLE......................................................................................................................................................................... 302
12 -18.4004m4w_J mol:protein length:317 Primosomal protein DnaI  ali model follow..  21  128..........................................................................................................................................................................GATFQQVDISDPSR-MFQHVTDFLKSETGKGKGLYLYGKFGVGKTFMLAAIANELAEK--EYSSMIVYVPEFVRELKNSLQDQTLEEKLNMVKTTPVLMLDDIGAESMTSWVRDEIGTVLQHRMSQQLPTFFSSNFSPDELKHKAARLMERI......................................................................................................................................................................................... 294
13 -17.9004tps_B mol:protein length:85 Chromosomal replication initiator protein DnaA  ali model follow..  13  4.....MENILDLWNQALAQIEKKLS---------------KPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYELTGEELSIKFVIPQ..................................................................................................................................................................................................................................................................................................................................................................................................................... 85
14 -17.6005bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-binding protein  ali model follow..  17  1...................................................................................................................................................................GPNKLPYRKTIDTFDFTAQPSVDERRIRELLTLS-DRKENILFLGPPGIGKTHLAISIGMEAIAR--GYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEMGYLKLDPNSAHYLFQVIARRYE-HAPIILTSNKSFGEATAMLDRLLHH---SIIFNLKGESYRLREKRLQEEKQ................................................................................................................................................................ 189
15 -16.2002e0g_A mol:protein length:107 Chromosomal replication initiator protein dnaA  ali model follow..  14  2.........LSLWQQCLARLQDELP---------------ATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQR......................................................................................................................................................................................................................................................................................................................................................................................... 107
16 -14.7006blb_A mol:protein length:355 Holliday junction ATP-dependent DNA helicase RuvB  ali model follow..  16  1.............................................................................................................................................SNAMIEPDRLISAVSGRERDEQLDRAIRPL-KLADYI-GQPSVREQELFIHAARGRQEALDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAG------------DVLFVDEIHRL--SPIVEEVL---YPAMEDFQLDIMIGEGPAARSIKMLTNPLRDRF--GIVQRLEFYNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGITRVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDVGIDNLAAALSEERHTIEDVLEPYLIRVVTRHAYLHFG............................................ 333
17 -14.5002wp0_C mol:protein length:112 CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA  ali model follow..  1.....MDTNNNIEKEILALVKQN-------------PKVSLIEYENYFSQLKYNPNASDIAFFYAPNQVLCTTITAKYGALLKEILSQNKVGMLAHSVDVRIEVAPKIQINAQSNINYKAIKTS............................................................................................................................................................................................................................................................................................................................................................................................... 109
18 -14.1001in4_A mol:protein length:334 HOLLIDAY JUNCTION DNA HELICASE RUVB  ali model follow..  17  6..........................................................................................................................................................TPERTVYDSGVQFLRPK-SLDEFI-GQENVKKKSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG------------DVLFIDEIHRL---NKAVEELL--YSAIEDFQIDIMIGKGPSAKSIRLLSSPLRSRFG--IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNEADTLSEVYEPYLLQAGFLRIVTEKAYKHLK............................................ 325
19 -13.6001hqc_A mol:protein length:324 RUVB  ali model follow..  15  5......................................................................................................................................................................ALRPK-TLDEYI-GQERLKQKRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEG-----------DILFIDEIHRL--SRQAEEHLY-AARTIRLELPRFTLIG--ATTRPGLITAPLLSRFG--IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEITRERALEALAALGLDELGLEKRDREILEVLILRFGVGLATLATALSEDPGTLEEVHEPYLIRVPTELAYRHLG............................................ 313
20 -13.6003pfi_A mol:protein length:338 Holliday junction ATP-dependent DNA helicase ruvB  ali model follow..  15  9.........................................................................................................................................................EIEKYSFDETYETSLRPS-NFDGYI-GQESIKKNNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEG------------DILFIDEIHRL---SPAIEEVL--YPAMEDYRLDIIIGSGPAAQTIKMLSNPLRDRF--GMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIRIASAKSYSALK............................................ 328
21 -13.4006HD0 Entity 1(prereleased)  ali follow..  17  241...........................................................................................................................................................................................................ILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAAIIFIDELDAIAPKRRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR--GRFDREV--DIGIPDATGRLEILQIHTKNMKLADDVDL-----EQVANETHGHVGA-------------DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV----EVPQVTWEDIG............................................ 480
22 -13.3005w0t_A mol:protein length:304 Protein MSP1  ali model follow..  16  80...........................................................................................................................................................................................................VLLYGPPGCGKTMLAKALAKES-----GANFISIRMSSIMDKWYGESNKIVDAMFSANKLQPCIIFIDEIDSFLRERSSTDEFMTLWDGLLNNGRVMIIGATNRINDI---DDAFLRRLPKRFLVSL--PGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKG----FSGSLKELCREAAL--DAAKEYIKQKRQLIDSGTIDVNDTSSLKIRPLKTKDFTSGLEVLF........................................................................... 303
23 -13.2004xgu_A mol:protein length:424 Putative pachytene checkpoint protein 2  ali model follow..  11  175...........................................................................................................................................................................................................ILLTGPPGTGKTSLCKGLAQHLNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEFVLIDEVESLGMCRRAVNALLTQIDRIRRRDNVLILCTSNLESTL---DKALVDRAD--IVKNVGQPSDFARYSMLKSSIMECDTKAPRNEFTEILFKIAQEARGLSGRISMLLVYSKSPEETITLPNCMNLFLEAVKERLSRN................................................................................................. 423
24 -13.1003hu1_A mol:protein length:489 Transitional endoplasmic reticulum ATPase  ali model follow..  17  241...........................................................................................................................................................................................................ILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAAIIFIDELDAIAPKRRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR--GRFDREV--DIGIPDATGRLEILQIHTKNMKLADDVDL-----EQVANETHGHVGA-------------DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV----EVPQVTWEDIG............................................ 480
25 -12.7002zam_A mol:protein length:444 Vacuolar protein sorting-associating protein 4B  ali model follow..  14  128........................................................................................................................................................................RPNVKWSD-VAG---EGAKEALKEAVILP-TPWRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKWLGESEKLVKNLFQARENKPSIIFIDEIDSLCGSRSENEEFLVQMQGVGVDNDGIVLGATNIPWVL---DSAIRRRFEKRIYIPL--PEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDADISIIDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDPGAIEMTWMDVPGDKLLEPVVSMWDMLSLSSTKPTVNEQDLLKL.......................................................... 433
26 -12.6003jco_H mol:protein length:467 26S protease regulatory subunit 7 homolog  ali model follow..  15  203........................................................................................................................................................................KPDVTYSD-VGGCKDQI--EKLREVVELP----SPILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKAIIFFDEIDAVGGAQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLR--GRID----VEFSLPDLEGRANIF--RIHSKSMSVERGI----WELISRLCPNSTGALRSVCTEAGMRRKVATEKDFLKAVDKVISGYKKFSST............................................................................................... 460
27 -12.6005vq9_D mol:protein length:432 Pachytene checkpoint protein 2 homolog  ali model follow..  11  175...........................................................................................................................................................................................................VLLHGPPGTGKTSLCKALAQKLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDFVLIDQVESLTAARRVVNAVLTQIDQIKRHSNVVILTTSNITEKI---DVAFVDRAD--IKQYIGPPSAAAIFKIYLSCLEEQIIYPRQQLLTLRENDISRKSEGLSGRLPFLAHALYVQAPTVTIEGFLQALSLAVDKQFEERKKLAA............................................................................................ 430
28 -12.4005uie_A mol:protein length:437 Vacuolar protein sorting-associated protein 4  ali model follow..  14  127........................................................................................................................................................................KPNVKWED-VAGGAKEALKEAVILPVKFPHKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAARENKPSIIFIDEVDALTGTRGEGEELLVQMNGVGNDSQGVVLGATNIPWQ---LDSAIRRRFERRIYIPL--PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTESDIAVV-QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAKSTRPTVNEDDLLKQ----------EQFTRDFGQEGN.................................... 437
29 -12.4005kzf_A mol:protein length:513 Proteasome-associated ATPase  ali model follow..  12  151.........................................................................................................................................................................PDVSYAD--IGGLSRQIEQIRDAVREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASIVFFDEMDSIFRTRGTGVQLLSEIDGVEGLENVIVIGASNREDMIDPAILR--GRLD----IKIERPDAEAAQDIYSKYLTEFLPVHADDLAECIKAMIEKVVDRM--IDDNRFLEVTYANGDKEVMYFKDFNSGAMIQNVVDRAKKNAIKSVLET--GLRIQHLLDSIVDE---------FAENEDLPNTTNPDDWARISKGERIVYIRTLVTGKSSSASRAIDTESN............ 508
30 -12.4005wc0_A mol:protein length:472 Meiotic spindle formation protein mei-1  ali model follow..  17  229...........................................................................................................................................................................................................MVLAGPPGTGKTLIARAIASES-----SSTFFTVSSTDLSSKWRGDSEKIVRLLFEARFYAPSIIFIDQIDTLGGQRRVKSEFLVQMDGSQNKFDSFVLAATNIPWEL---DEALRRRFEKRIFIPL--PDIDARKKLIEKSMEGTPKSDEINY-DDLAARTEADVVSLTAAINVLAAMESLKAELVRNIDFEAALQAVSPSAGPDTML............................................................................................... 460
31 -12.3005ujm_A mol:protein length:522 Origin recognition complex subunit 1  ali model follow..  13  165.................................................................................................................................................................................LPCREQEFQDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAPPFQYIEVNGMKLTEQILQKLTGQKAELLAKQFCTRGVLLVDELDILWTHK--QDIMYNLFDWPTHKEARLVVLAIANTMDLPEMMNRVSSRLGLTRMC-FQPYTYSQLQQILRSRLKHLKA-FEDDAIQLVARKVAALSGDARRCL------------DICRRATEICEFSQQKPDSPGLVTIAHSMEAVDEMFSSSYITIKNSSVLEQSFLRAILAEFRRSGLEEATFQQIYSQH-----------VALCRMEGLPYPTMSETMAVCSHLGSCR.. 491
32 -12.2002x8a_A mol:protein length:274 NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE  ali model follow..  17  5.........................................................................................................................................................................PNVTWAD--IGALEDIREELTMAIKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPVIFFDEVDALCPRRSDREQLLTEMDGLEARQQVFIMAATNRPDII---DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNTKPPLDADVLEAIAGDLRCDLSAL--ALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI........................................................................................... 274
33 -12.2003jco_L mol:protein length:437 26S protease subunit RPT4  ali model follow..  15  175........................................................................................................................................................................QGEITFDG-IGGLTEQI--RELREVIELP----NPVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPIIFMDEVDAIGGRQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLR--GRLD----VEIPLPNEAGRLEIFKIHTAKVKKTGEFDF-----EAAVKMSDGFNGAIRNCATEAGFDRDHINPDDLMKAVRKVAEVKKLE.................................................................................................. 429
34 -12.1003whk_A mol:protein length:270 Proteasome-activating nucleotidase, 26S protease regulatory subunit 6A  ali model follow..  16  54...........................................................................................................................................................................................................VLLYGPPGCGKTLMAKAIAHEV-----NATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPIIFIDEIDAIGAKNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLR--GRFD----IEVPLPDEFSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSVKHEDFVEGISEVQARKSKS.................................................................................................. 265
35 -12.1006chs_H mol:protein length:819 Putative cell division control protein  ali model follow..  13  531...........................................................................................................................................................................................................VLFYGPPGTGKTMLAKAVANEC-----AANFISVKGPELLSMWFGESESNIRDIFDKARAAAPVVFLDELDSIAKARGGSIQLLTEMDGMTSKKNVFVIGATNRPEQLDPALCR--GRLD---LIYVPLPDEAGRLSILKAQLRKTPVYIASKTHGFSGADLAFITQRAV-AIKESIAAEIERQKAREAAGEDVNMED--DEDPVPELTKRHFEEAMRDA-SVSDVEIRRYEAFAQQMKGPGAFFKASNAAGNSFGDAG............................................. 812
36 -12.1005dyg_A mol:protein length:468 Transitional endoplasmic reticulum ATPase  ali model follow..  17  241...........................................................................................................................................................................................................ILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAAIIFIDELDAIAPKRRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR--GRFDREV--DIGIPDATGRLEILQIHTKNMKLADDVDL-----EQVANETHGHVGALAALCSEAALQ-------AIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNRS......................................................................... 462
37 -12.1003vfd_A mol:protein length:389 Spastin  ali model follow..  17  151...........................................................................................................................................................................................................LLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTSKYVGEGEKLVRALFAARELQPSIIFIDQVDSLLCERREGEEFLIEFDGVQSAGDDLVMGATNRPQEL---DEAVLRRFIKRVYVSL--PNEETRLLLLKNLLCKQGSPLTQKELAQLA-------RMTDG-------YSGSDLTALAKDAALGPIRELK-PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTL................................................................... 374
38 -12.1004bwy_A mol:protein length:321 P4  ali model follow..  16  68.....................................................................................................................................................................KMVRPSVSARDLIGVGYATASAAVVRQRLIEHKIEAGAELIISGTAGGKTVLTNHYAAQMCAK--GLKVAVVSMAEAERPLYGSVLHVFAALHLAAVSDVDVLYVDSL---LKKGGVSRQVDGMLTALDQVNMRVVFTLNPSDDE--NVDAAVRSVFK---LRADRSNSANRVSGDLVSRGVSNANAIGAVFNQFLLS-LGPNIPEIEGV.................................................................................................................................... 319
39 -12.0003eih_A mol:protein length:340 Vacuolar protein sorting-associated protein 4  ali model follow..  15  72...........................................................................................................................................................................................................ILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAARENKPSIIFIDQVDALTGTRGEGEELLVQMNGVGNDSQGVVLGATNIPWQ---LDSAIRRRFERRIYIPL--PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTESDIAVV-QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLAIKSTRPTVNEDDLLKQ.......................................................... 328
40 -12.0004d80_A mol:protein length:316 AAA ATPASE, CENTRAL DOMAIN PROTEIN  ali model follow..  15  75...........................................................................................................................................................................................................ILLYGPPGCGKTMIAAAVANEL-----DSEFIHVDAASIMSKWLGEAEKNVAKIFKKKENKPAIIFIDELDALLASYTSEVQFLKEMDGLADKNEIYVIGATNKPWRL---DEPFLRRFQKRIYITL--PDKAHRLELLKHYSSKVKLDPNVNLEEYTASDIRDIVQSAHRVVKEMFEKNLQEPRAINMDDFREVLKVRKPSVNQDMLK............................................................................................... 298
41 -12.0003jco_I mol:protein length:437 26S protease regulatory subunit 4 homolog  ali model follow..  15  219...........................................................................................................................................................................................................VILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPIVFIDEIDAIGTKQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIR--GRID----ILFENPDLSTKKKIL--GIHTSKMNLSEDV----LETLVTTKDDLSGAIQAMCTEAGLRRMQVTAEDFKQAKERVMKNKVEENLE............................................................................................... 433
42 -12.0006ap1_A mol:protein length:519 Vacuolar protein sorting-associated protein 4,Protein hcp1  ali model follow..  14  29.........................................................................................................................................................................PNVKWED--VAGLEGAKEALKEAVIKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAMRENKPSIIFIDEVDALTGTRRIKTELLVQMNGVGNDSQGVVLGATNIPWQL---DSAIRRRFERRIYIPL--PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTESDIAVV--PIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAKSTRPTVNEDDLLKQ.......................................................... 326
43 -12.0006mdm_A mol:protein length:768 Vesicle-fusing ATPase  ali model follow..  15  215...........................................................................................................................................................GKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASR-KHVKGILLYGPPGCGKTLLARQIGKMLNARE----PKVVNGPEILNKYVGESEANIRKLFADAEEELHIIIFDEIDAICKQDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLI---DEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHLSADVIKELAVETKN--AELEGLVRAAQSTAKAESLQVTRGDFLASLENDIKPAFGTNIKWGDPVTRVLDDGELLVQQLEGPPHSGKTALAAKIAE-MIGFSETAKCQAMKKIFDDAYKSVVDDIERLLDYVPIGPRFSNLVQALLVLLKKAPPQ 654
44 -12.0002rko_A mol:protein length:331 Vacuolar protein sorting-associated protein 4  ali model follow..  15  57...........................................................................................................................................................................................................ILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAARENKPSIIFIDEVDALTGTRGEGEELLVQMNGVGNDSQGVVLGATNIPWQ---LDSAIRRRFERRIYIPL--PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTESDIAVV-QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAKSTRPTVNEDDLLKQ.......................................................... 313
45 -11.9003eie_A mol:protein length:322 Vacuolar protein sorting-associated protein 4  ali model follow..  15  54...........................................................................................................................................................................................................ILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAARENKPSIIFIDQVDALTGTRGEGEELLVQMNGVGNDSQGVVLGATNIPWQ---LDSAIRRRFERRIYIPL--PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTESDIAVV-QPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAKSTRPTVNEDDLLKQ.......................................................... 310
46 -11.9001xwi_A mol:protein length:322 SKD1 protein  ali model follow..  16  48...........................................................................................................................................................................................................ILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVSKWLGESEKLVKNLFQARENKPSIIFIDEIDSLCGSRSENEEFLVQMQGVGVDNDGIVLGATNIPWV---LDSAIRRRFEKRIYIPL--PEPHARAAMFKLHLGTTQNSLTEADFRELGRKT-------DG-------YSGADISIIVRDALMQPVRKVQSATHFKKVR............................................................................................... 244
47 -11.8006epc_M mol:protein length:442 26S proteasome regulatory subunit 6A  ali model follow..  15  226...........................................................................................................................................................................................................VLMYGPPGTGKTLLARACAAQT-----KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPIIFIDELDAIGTKQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLR--GRLD----IEFPMPNEEARARIMQIHSRKMNVSPDVNY-----EELARCTDDFNGACKAVCVEAGMGATELTHEDYMEGILEVQAKKKAN.................................................................................................. 437
48 -11.8003jco_M mol:protein length:434 26S protease regulatory subunit 6A  ali model follow..  15  218...........................................................................................................................................................................................................ALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPIIFIDELDAIGTKQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLR--GRLD----IEFPLPSEDSRAQILQIHSRKMTTDDDINW-----QELARSTDEFNGALKAVTVEAGMGQSSVKHEDFVEGISEVQARKSKS.................................................................................................. 429
49 -11.7005gjq_I mol:protein length:440 26S protease regulatory subunit 4  ali model follow..  15  222...........................................................................................................................................................................................................VILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPIVFIDEIDAIGTKQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR--GRID----IEFPLPDEKTKKRIF--QIHTSRMTLADDV----LDDLIMAKDDLSGAIKAICTEAGLRRMKVTNEDFKKSKENVLYKKQEGTPEGLYL........................................................................................... 440
50 -11.7005kwa_A mol:protein length:497 Proteasome-associated ATPase  ali model follow..  14  142.........................................................................................................................................................................PDVSYAD--IGGLSRQIEQIRDAVREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASIVFFDEMDSIFRTRGTGVQLLSEIDGVEGLENVIVIGASNREDMIDPAILR--GRLD----IKIERPDAEAAQDIYSKYLTEFLPVHADDLAECIKAMIEKVVDRM--IDDNRFLEVTYANGDKEVMYFKDFNSGAMIQNVVDRAKKNAIKSVLET--GLRIQHLLDSIVDE..................................................................... 449
51 -11.7004lgm_A mol:protein length:295 Vps4 AAA ATPase  ali model follow..  14  60...........................................................................................................................................................................................................ILLYGPPGCGKTMIAAAVANEI-----DSIFMQLDAASVMSKWLGEAEKNVANVFKKKQNKPAIIFIDQLDALLGVYSTEVQFLKEMDGLLDKSENYVIGATNKPWRL---DEAFLRRFQKRIYVPL--PDYEQRLSLFKYYTSKIKLDTEVSLEEYTASDIRDIVQAAHKVVKEMFKNNLGEPRTITLQDFKDILKVRMPSVNPELIK............................................................................................... 283
52 -11.7004lcb_A mol:protein length:367 Cell division protein CdvC, Vps4  ali model follow..  15  133...........................................................................................................................................................................................................ILLYGPPGNGKTMLAAAVANEI-----DSYFIHVDAASIMSKWLGEAEKNVAKIFNKKDNKPAIIFVDEIDALLGTYTSEVQFLKEMDGIMDKNENYVIGATNKPWRL---DEPFLRRFQKRIYVPL--PDFNQRLALFKYYTSKVKLGLAKMTEGYSASDIRDIVQSAHRVVKEMFEKNLSEPREITMDDFKEVLKIRKPSVNQELLK............................................................................................... 355
53 -11.7006HD3 Entity 1(prereleased)  ali follow..  17  244...........................................................................................................................................................................................................ILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNASIIFIDEIDSIAPKRRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR--GRFDREI--DIGVPDEIGRLEVLRIHTKNMKLAEDVDL-----ERISKDTHGYVGA-------------DLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEV......................................................... 474
54 -11.6001r7r_A mol:protein length:816 Transitional endoplasmic reticulum ATPase  ali model follow..  14  514...........................................................................................................................................................................................................VLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPVLFFDELDSIAKADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR--GRLD----IYIPLPDEKSRVAILKANLR--KSPVAKDVLEFLAKMSGADLTEIRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA-SVSDNDIRKYEMFAQAGPSQGSGGGNDDDLYGAA................................................. 808
55 -11.6004l15_A mol:protein length:334 Fidgetin-like protein 1  ali model follow..  17  92...........................................................................................................................................................................................................VLLFGPPGTGKTMIGRCVASQC-----KATFFNISASSLTSKWVGEGEKLVRALFSARLKLPSVIFIDEIDSLLSSRSESEEFLVQLDGVNTAPDELVLGATNRPQE---LDEAARRRFQKRLYIAL--PEPESRTQIVQNLLVGTRHDITNHNLERIRELTDADMRQLEAAMGPIRDIGDDIETIDKDDIRAVTVMDFAEAARVVRPTVDDSQLDAYAAWDKKFGCLPPPSISR..................................................................... 334
56 -11.6002chq_A mol:protein length:319 REPLICATION FACTOR C SMALL SUBUNIT  ali model follow..  12  15............................................................................................................................................................................TLDEVV--GQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVRHKIKEFARTA-APFKIIFLDEADALT--ADAQAALRRTMEM-YSKSCRFILSCNYVSRIIEPIQSRCA-------VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI----GEVVDADTIYQITATARPE------EMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKD------SLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLAKK 319
57 -11.6003t15_A mol:protein length:293 Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic  ali model follow..  12  1............................................................................................................................................................................NLDNKLDGIAPAFMDKLVVHITKNFLKLPN-LGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYRERKGNMCCLFINDLDAGAGRTVNNQMVNATLMNIADNPTNIIVTGNDF----STLYAPLIGRME----KFYWAPTREDRIGVCTGIFRTDNVPA-EDVVKIVDNFPGQSIDFFGALRARVYDDEV---RKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK.............................................................. 293
58 -11.5005eqt_A mol:protein length:257 Proteasome-activating nucleotidase  ali model follow..  16  42...........................................................................................................................................................................................................VLLYGPPGCGKTLMAKALAHEV-----NATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPIIFIDEIDAIGAKNRTLMQLLAEMDGFDPRGNVKVIAATNRP---DILDPALLRPGRFDRLIEVPLPDFEGRLEIL--KVHTRRMKLKGVDLRAIAEMTEGSGADLKAIATEAGMFAIRERRTVTQEDFLKAVDKVLGNERKLLQQIT............................................................................................. 257
59 -11.5005c18_A mol:protein length:785 Transitional endoplasmic reticulum ATPase  ali model follow..  16  513...........................................................................................................................................................................................................VLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPVLFFDELDSIAKARGGNIQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR--GRLD----IYIPLPDEKSRVAIL--KANLRKSPVAKDV-------------DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRPEIRRDHFEEAMRF--SVSDNDIRKYEMFAQAGPSQGSGGGNDDDLYG................................................... 785
60 -11.4003b9p_A mol:protein length:297 CG5977-PA, isoform A  ali model follow..  17  57...........................................................................................................................................................................................................LLLFGPPGNGKTLLARAVATEC-----SATFLNISAASLTSKYVGDGEKLVRALFAARHMQPSIIFIDEVDSLLSERSSSEEFLVEFDGL-DGDRIVVLAATNRPQE---LDEAALRRFTKRVYVSL--PDEQTRELLLNRLLQKQGSPLDTEALRRLAKITD--------------GYSGSDLTALAKDAALEPIRELN-VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSL................................................................... 281
61 -11.3001iqp_A mol:protein length:327 RFCS  ali model follow..  13  23............................................................................................................................................................................RLDDIV--GQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGINVIREKVKEFARTK-ASFKIIFLDEADALT--QDAQQALRRTMEM-FSSNVRFILSCNYSSKIIEPIQSRC-AIF------RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA----AALDKKITDENVFMVASRARPE------DIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEE------PKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGKK 327
62 -11.3004w5w_A mol:protein length:391 Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic  ali model follow..  12  104...........................................................................................................................................................................................................LGIWGGKGQGKSFQCELVMAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREKKGKMCCLFINDLDAGAGRMGNNQMVNATLMNIADNPTNIICTGNDF----STLYAPLIRRME----KFYWAPTREDRIGVC--KGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGV--EKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGG....................................... 381
63 -11.3005gjq_J mol:protein length:406 26S protease regulatory subunit 8  ali model follow..  16  186...........................................................................................................................................................................................................VLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPIIFMDEIDSIGSSQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLR--GRID----IEFPPPNEEARLDILKIHSRKMNLTRGINL-----RKIAELMPGASGAVKGVCTEAGMRRVHVTQEDFEMAVAKVMQKDSEKNM................................................................................................ 399
64 -11.3005c3c_A mol:protein length:281 CbbQ/NirQ/NorQ domain protein  ali model follow..  17  43..........................................................................................................................................................................................................PMMLKGPTGCGKSRFVEHMAWKL---NRPLITIACNEDMTASDLVGRYLLDKDGPLTVAARIGAICYLDEI------VEARQDTIVVIHPLTDHRRQIVISYNPGYQSMKDLKQSTKQRF---GALDFDYPKPDIEAEIVSHEAG-----VDKDTAEKLVQ-IAQKARNLKGSTRLLVYAGKLIAKGVDAAACTMTLVNPITDDVDMRDALDTVVKTF....................................................................................... 274
65 -11.3003h4m_A mol:protein length:285 Proteasome-activating nucleotidase  ali model follow..  16  54...........................................................................................................................................................................................................ILLYGPPGTGKTLLAKAVATET-----NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPIIFIDEIDAIAAKQRTLMQLLAEMDGFDARGDVKIIGATNRP---DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDVTMDDFRKAVEKIMEKK..................................................................................................... 262
66 -11.2005wwp_B mol:protein length:600 ORF1ab  ali model follow..  11  261......................................................................................................................................................................................PEEFASHVANFQKSGYSKY--VTVQGPPGTGKSHFAIGL----AIYYPTARVVYTASHAAVDALCEKAFKYLNIAKCSRITSADILVVDEV-----SMCTNYDLSIINARI--KAKHIVYVGD--PAQLPAPRTLLTRGTLEPENFNSVTRLMCNLGPDIFLSMC---YRCPKEIVSTVSALVYNN---------KLLAKKELSGQCFKILYKGNVTHDASSAINRPQLTF--VKNFITA--NPAWSKA--------FISPYNSQNAVSRSMLGLTTQTVDSSQGSEYQYVIFCQTADTAHANNINRFNVAITRAQKGI...... 574
67 -11.2005t0g_E mol:protein length:403 26S protease regulatory subunit 10B  ali model follow..  15  184...........................................................................................................................................................................................................CLLYGPPGTGKTLLARAVASQL-----DCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPIIFMDEIDAIGGRQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLR--GRLD----IHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFARADHDFVVQEDFMKAVRKVADSKKLEKLDYKPV........................................................................................... 403
68 -11.1003d8b_A mol:protein length:357 Fidgetin-like protein 1  ali model follow..  16  114...........................................................................................................................................................................................................ILLFGPPGTGKTLIGKCIASQS-----GATFFSISASSLTSKWVGEGEKMVRALFAARCQQPAVIFIDEIDSLLSQRGDGEEFLVQLDGATTSSEDLVVGATNRPQE---IDEAARRRLVKRLYIPL--PEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-------DA-------FSGADMTQLCREASLGPIRSLQ-TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDL................................................................... 337
69 -11.1001sxj_B mol:protein length:323 Activator 1 37 kDa subunit  ali model follow..  11  19............................................................................................................................................................................VLSDIV--GNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-VRNQIKHFAQKKLHLPPGKHK---IVILDEADSMT--AGAQQALRRTMEL-YSNSTRFAFACNQSNKIIEPLQSQC-AIL------RYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG----LVNADNVFKIVD---------SPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVR-----LEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNK 322
70 -11.1003jco_K mol:protein length:428 26S protease regulatory subunit 6B homolog  ali model follow..  15  209...........................................................................................................................................................................................................VLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPIIFIDEVDSIATKQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLR--GRLDRKIEFP-SLRDRRERRLIFGTIASKMSLAPEADL-----DSLIIRNDSLSGAIAAIMQEAGL----RAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK.................................................................................. 428
71 -11.0005ubv_A mol:protein length:246 ATPase domain of i-AAA protease  ali model follow..  19  36.....................................................................................................................................................................................................GKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYMSGSEFDEIYVGVGAKRVRELFNAAKAKAPIVFIDELDAIGGRRQTLNQLLTEMDGFAQNSGVIILGATNFPESLDKALTR--GRFDRHVHVSL--PDVRGRIAILKHHAKKIKIGSDVNIAAIAARTSGLSGAELENIVNQAAVHASKEKAKVMQAHFEWAKDKVI........................................................................................................ 244
72 -11.0005g4f_A mol:protein length:726 VCP-LIKE ATPASE  ali model follow..  15  227...........................................................................................................................................................................................................VILYGPPGTGKTLIARAVANES-----GANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPIIFIDEIDSIAPKREEVQQLLTLMDGMKERGHVIVIGATNRIDAI---DPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLEMADYTYGFVGADLAALVRESA-ALRRYLPEIDLDKPIPTEILEKMVVTEDDFKNALKSIEPSSLREVMVEVPNVHWDDIGGLEDVKRIRPSKGFLLYLAKAVATES-EVLSKWVGESEKAIREIFKKAKQVAPA---FLDEIDSIAPR....... 575
73 -11.0001sxj_C mol:protein length:340 Activator 1 40 kDa subunit  ali model follow..  12  2..........................................................................................................................................................STSTEKRSKENLPWVEKYRPETLVYGQ-NEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--NAAQNALRRVIER-YTKNTRFCVLANYAHKLTPALLSQC-TRF------RFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR---VLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDL--KAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETR-----VHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE. 332
74 -11.0005gjq_K mol:protein length:418 26S protease regulatory subunit 6B  ali model follow..  14  202...........................................................................................................................................................................................................VLMYGPPGCGKTMLAKAVAHHT-----TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPIIFIDEIDAIATKQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLR--GRLD----IEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYVLAKDFEKAYKTVIKKDEQE.................................................................................................. 413
75 -10.9004ww0_A mol:protein length:497 ATP-dependent zinc metalloprotease FtsH  ali model follow..  16  12........................................................................................................................................................................KPKVTFKD-VAG-----IEEVKEEVKEIIEYLKDPVLLYGEPGVGKTLLAKAIAGEA-----HVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPMIFIDEIDAVGRAEQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLR--GRFDRQIFIPK--PDVRGRYEILKVHARNKKLAKDVDLEFVARATPGLTGADLENLLNEAALLAARKGKEITMEEIEEALDRITMGLERKGMTISPKEKEKIAIHEAGHALM-DDKVHKISIIPRGMALGVTQQLPIEDKHIYDKK-GRAAEEVFFGKDGITTGAENDLQRATDL............. 366

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.