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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -90.1006bar_A mol:protein length:359 Rod shape determining protein RodA  ali model follow..  28  5...................................RPNWLAYDWGLVFLVAAIVALGFVNLGSAA--------PDPVLLYRQSVALGLGLLLAFLLQFL--SRRRLFGLAYPLYGASLLLLALVLVV---GREINGARAWFVLGPLQFQPLELAKLGLLLALAKALEGRP--------------IARVWDYALPALLTLPVVGLLLLQPDLGGALVVLFGVFVVVFVRGLPWRHLLVGLFALALLVPTAVWLKPYQRERVLIVLDPYRDPLGQGFQVIQSTIAIGSGGLFGKGYGQGTQAFIPFRHTDFVFSVWAEEWGFVGVVGLLGLYGLLLARLFALALACPRLSDRLFLSGFAGMLGFQVVVNLGVALGVMPVTGLTLPLFSYGGSSLIATLAGLGLVLLVHRDRYQD...................... 359
2 -9.1502ksr_A mol:protein length:164 Neuronal acetylcholine receptor subunit beta-2  ali model follow..  11  6..............................................................................................................................................................................................................................................................................................................DLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAI-LVFYLPSDCGEKMTLCISVLLALTVFLLL--ISKIVPPTSLDVPLVGK---MFTMVLVTFSIVTSV............................. 104
3 -7.6802lkg_A mol:protein length:140 Acetylcholine receptor  ali model follow..  10  27..............................................................................................................................................................................................................................................................................................................AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTG-LVFYLPTDSGEKMTESKSVLKSLTEKLKK--IVELIPSTSSAVPLIGK---LFTKEFVESSIKITE............................. 125
4 -6.8306g1k_A mol:protein length:921 Transient receptor potential cation channel subfamily c member 4a  ali model follow..  9  332............................................TCVFIGLMFPLLSLCYLVAPKSRYGLFIRKPFIKFICHTASYLTFLFLLLLASQHIVSNNPDRQGPKPTTVEWMILPWVLGFIWTEIKQMGGFQDYIH---MDFVMNSLYLATISLKIVAYVKYSGCKPRDTWEMWHPTLVAEAVFAIANIFSSLRLISLFTANSHLGPLQISLGRMLILKFL-------FIYCLVLLAFANGLNQLYFYYENSEGMTCKGIRCERQNNAFSTLFETLQSLFWSIFGLISLYVTNVKADHKFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKF----------TKLWMSYFEEGGTLP------PPFNIIPSPKSICYLITWIKVHVFKRRSKRTETFGTLGRRAAENVRLNHQ.. 704
5 -6.7805kom_A mol:protein length:147 Putative fluoride ion transporter CrcB  ali model follow..  13  1....................................................................................................................................................................................................................................................................................MIKSLFAVIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLV--VNLLAGLIIGTALAYFLRQP-----HLDPFWKLMITTGL-----------CGGLSTFSTISVEVFALLQAGNYIWALTSVLVHVIGSL............................. 111
6 -6.7405kbn_A mol:protein length:147 Putative fluoride ion transporter CrcB  ali model follow..  13  1....................................................................................................................................................................................................................................................................................MIKSLFAVIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLV--VNLLAGLIIGTALAYFLRQ-----PHLDPFWKLMITTGL-----------CGGLSTISTFSVEVFALLQAGNYIWALTSVLVHVIGSL............................. 111
7 -6.5804dji_A mol:protein length:511 Probable glutamate/gamma-aminobutyrate antiporter  ali model follow..  15  132.....................................................................................IAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDGTLVVFVAFILSEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLA---------EIASWI----------VGPSRGMYVTAQKNLLPAAFAKMNKNGVP----------------VTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSI............................. 424
8 -6.5601oed_E mol:protein length:260 ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN  ali model follow..  15  2...............................................................................................................................................................................................................................................................................................................................LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFL--IAQKVPETSLNVPLIGYLIFVMFVSMLIV-IVLNVSLRTPN....................... 95
9 -6.4001oed_A mol:protein length:227 ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN  ali model follow..  15  5...............................................................................................................................................................................................................................................................................................................................VVNVIIPCLLFSFLTGLVFYLPTDSGEK----MTLSISVLLSLTVFLLV--IVELIPSTSSAVPLIGK---LFTMIFVISSIIITV............................. 83
10 -6.3702lly_A mol:protein length:137 Neuronal acetylcholine receptor subunit alpha-4  ali model follow..  17  14......................................................................................................................................................................................................................................................................................................................................LIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLL--ITEIIPSTSSVSPSIGE---LFTMIFVTLSIVITV............................. 89
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.