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Query: gi|15607168|ref|NP_214540.1| hypothetical protein (Rv0026) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAFDAAMSTHEDLLATIRYVRDRTGDPNAWQTGLTPTEVTAVVTSTTRSEQLDAILRKIRQRHSNLYYPAPPDREQGDAARAIADAEAALAHQNSATAQLDLQVVSAILNAHLKTVEGGESLHELQQEIEAAVRIRSDLDTPAGARDFQRFLIGKLKDIREVVATASLDAASKSALMAAWTSLYDASKGDRGDADDRGPASVGSGGAPARGAGQQPELPTRAEPDCLLDSLLLEDPGLLADDLQVPGGTSAAIPSASSTPSLPNLGGATMPGGGATPALVPGVSAPGGLPLSGLLRGVGDEPELTDFDERGQEVRDPADYEHSNEPDERRADDREGADEDAGLGKSESPPQAPTTVTLPNGETVTAASPQLAAAIKAAASGTPIADAFQQQGIAIPLPGTAVANPVDPARISAGDVGVFTATPLPLALAKLFWTARFNTSQPCEGQTFLast
1 -13.1005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  10  1MAKIAK--THEDIEAQIREIQGKKAALDE-GVGLDSTGYYDQEIYGGSDSRFAGYVTSIAAT-----ELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQS-PPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYV....................................... 422
2 -9.6204q4g_X mol:protein length:472 Peptidoglycan endopeptidase RipA  ali model follow..  11  23...............................SALSVALLVCTPGLATADPQTDTIAALIADVAKANQRLQDLSDEVQAEQESVNKAMVDVETARDNAAAAEDDLEVSVKDANAAIAAAQHRFDTFAAATYMNGPSVSYLSSPDEIIATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQDAAVAALTETRRKFDEQREEVQRLAAERDAAQARLQAARLVAWSSEGGQGAPPFRMWDPGSGPAGGRAWDGLWDPTLPMIPSANIPGDPIAVVNQVLGISATSAQVTANMGRKFLEQLGILQPTDTGITNAPAGSAQGRIPRVYGRQASEYRRGMSQIGVPGGGNAAGPSKGIDSGAGTV-SG--VLYSFAGVGIKLPHYSGSLGRKIPSSQMRRGDVIFYGPN-IYLGNGQML-VGLKVRVAPV..... 457
3 -9.4405gjv_A mol:protein length:1873 Voltage-dependent L-type calcium channel subunit alpha-1S  ali model follow..  1409..YDKGRIKHLDVVTLLRRIQPPLG--------FCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAIIKKKRTSMKLLDQVIPPTVGKFYAT-QEHFRKFMKRQEEYYGYRPKKDTVQIQAGLRTIEEEAAPEIRRTISGDLTAEEELERAMVEAAMEERIFRRTGGLFGQVDTFLERTNSLPPVMANQRPLQFAEIEMEELESPVFLEDFPQDARTNPLARANTNNANANVAYGNSNHSNNQMFSSVHCEREFPGEAETPAA-----GRGALSHSHRALGPHSKPCAGKLNGQLVQPGMPINQAPPAPCQQPSTDPPERGQRRTSLTGSLQDEAPQRRSSEGSTPRRPAPATALLIQEALVRGGLDTLAADAGFVTATSQALADACQMEPEEVEVAATELLKARESVQGMASVPGSLSRRSS... 1854
4 -6.7601r8i_A mol:protein length:213 TraC  ali model follow..  11  4.VSNPTGEQLEQMAQQLEQLKSQLETQKNMYESMAKTNLGDLLGTSTNPDNWKEVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRVMAEKAYNNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRAQKDRATRNFVFGTGGDVTA.............................................................................................................................................................................................................................................................. 208
5 -6.5905fur_J mol:protein length:677 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6  ali model follow..  12  333..............................................................................AARLVAQICKHFSTTTNNISRITKTFTKSWVDEKTPWTTRYGSIAGLAE----------------GHDVIKTLILPRLQQIRSVLDGPVLSNIDRIGAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP........................................... 677
6 -6.4602d4y_A mol:protein length:463 Flagellar hook-associated protein 1  ali model follow..  12  1MEYDNQSSGLTTRYEQMSKIDNLLADKS---SSLS------------------GSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQI-SRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANG............................................................................................................................................................................................................................................................................. 168
7 -6.1905npv_B mol:protein length:301 Autophagy-related protein 16-1  ali model follow..  25.AFEEIILQYNKLLEKSDLHSKLQAEKHDVPNRHEISPGHDGTWNDNQLQEMAQLRIKHQEELTEL-------KKRGELAQLVIDLNNQMQRKDREMQMNEAKIAECLCDLERANQTLKDEYDALQITFTALEGKLRKTTE-ENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQK............................................................................................................................................................................................................................................................................. 216
8 -6.1105yfp_E mol:protein length:871 Exocyst complex component SEC10  ali model follow..  12  1......MNSLYELDPKWKKL-----KTDNFLGGLTVNEVQELSKDHRNDVLIDANTKNLPTNEKDQDAIREAIWKQLDPKPYIRTFESTLKELKNLNEETLNKRQYFSEQVATQEVIHSENVIKLSKDLHTTLLTFDKLDDRLTN------VTQVVSPLGDKLETAI-KKKQNYIQSVELIRRYNDFYSMGKSD.............................................................................................................................................................................................................................................................. 178
9 -6.0503vcf_A mol:protein length:163 Probable integrase  ali model follow..  12  3...DIYIPTLEEIKRTLQLAKDYSENVYF-ESGVRLSEILKVLKEPERDICGNDPLSWTRGYKGVFYVFHITPLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVP----LDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV................................................................................................................................................................................................................................................................................................. 163
10 -6.0203mtt_A mol:protein length:187 Phosphatidylinositol 3-kinase regulatory subunit beta  ali model follow..  10  52.AFNETIKIFEEQGQTQEKCSKEYLER--------------------------------------------RREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQQLRAQASDNREIDKRMNSLKPDLMQLRKI---------RDQYLVWLTQK-KKINEWLGIKNETEDQYALMEDL............................................................................................................................................................................................................................................................................. 180

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.