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Query: gi|15607173|ref|NP_214545.1| remnant of A transposase (Rv0031) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MLARHFGAGRKAHSRAVATLKADIQAWHPAGIQTPKPRCESDVFARIGHTSHPSTRKSRVGPGASEAPLALast
1 -8.8305b0v_A mol:protein length:317 Matrix protein VP40  ali model follow..  25  83..................RTVKGVPAWLPLGIMVAALLTGSYTITQFTHNGQKFVRVNRLGTGIPAHPL. 143
2 -8.6504zrj_B mol:protein length:90 Merlin  ali model follow..  18  25.......EKSKHLQEQLNELKTEIEALKLKERETALDILHNENSDRGGSSKHNTIKKLTLQ......... 78
3 -8.2301es6_A mol:protein length:296 MATRIX PROTEIN VP40  ali model follow..  31  57..................VLMKQIPIWLPLGVATAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPL. 117
4 -8.1504ldb_A mol:protein length:297 Matrix protein VP40  ali model follow..  31  52..................VLMKQIPIWLPLGVATAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPL. 112
5 -8.0104ld8_A mol:protein length:297 Matrix protein VP40  ali model follow..  31  52..................VLMKQIPIWLPLGIATAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPL. 112
6 -7.6803tcq_A mol:protein length:326 Matrix protein VP40  ali model follow..  31  87..................VLMKQIPIWLPLGIATAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPL. 147
7 -6.2601g9m_G mol:protein length:321 ENVELOPE GLYCOPROTEIN GP120  ali model follow..  16  236......NTEGSDTITLPCRIKQIINMWQKVGKAMYAPRCSSNITGLLLTRDGGNSNNESE-PGGGD.... 303
8 -6.2103to3_A mol:protein length:619 Petrobactin biosynthesis protein AsbB  ali model follow..  22  128...............TIFKDTIAQYERCNKLKYTQKSYDELENHLIDGHPYHPSY-KARIGFQYRD.... 177
9 -5.8601ef1_C mol:protein length:90 MOESIN  ali model follow..  13  26.......EKNERVQKHLKALTSELANARDESKKTANDMIHAE--MRLGRDKYKTLRQIRQG......... 78
10 -5.8405jm7_A mol:protein length:576 Aerobactin synthase IucA  ali model follow..  31  140.......................................EAEQALLVGHAFHPAP-KSHEPFNQQELP.. 171

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.