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Query: gi|15607178|ref|NP_214550.1| hypothetical protein (Rv0036c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADPGPFVADLRAESDDLDALVAHLPADRWADPTPAPGWTIAHQIGHLLWTDRVALTAVTDEAGFAELMTAAAANPAGFVDDAATELAAVSPAELLTDWRVTRGRLHEELLAVPDGRKLAWFGPPMSAASMATARLMETWAHGLDVADALGVIRPATQRLRSIAHLGVRTRDYAFIVNNLTPPAEPFLVELRGPSGDTWSWGPSDAAQRVTGSAEDFCFLVTQRRALSTLDVNAVGEDAQRWLTIAQAFAGPPGRGRLast
1 -65.8002nsf_A mol:protein length:261 Hypothetical protein Cgl3021  ali model follow..  15  21.LPLEERLTLARLGTSHYSRQLSLVDNAEFGEHSLLEGWTRSHLIAHVAYNAIALCNLMHWANTGEETP---MYVSPEARNEEIAYGSTLNPDALRNLHEHSVARLDVAWRETSEDAWLTAQGRTVPASETLWMRSREVWIHAVDLGAVATFGDIPEVILRTLAAEITQKWT--------SQGAGEGLVLLDEPSSTRYPAAPGQDEVVVSGSLAGIVRYAAGRGSDGVTSSTGEVPEPPRWL.............. 255
2 -32.0005civ_A mol:protein length:184 Sibling bacteriocin  ali model follow..  13  12.TSKEELKKTIHAAYLLLDGEFEGIDDSQKDNRVPEVDRTPAEIIAYQLGWLHLVMGWDRDELAGKPAPGYKWNQLGGLYQSFYAAYADLSLTELRRLFRDTERQWLDWIDTLSEEDLFTQSVGDKPNWPMARWIHINSAAPFKTFRAKI........................................................................................................... 168
3 -31.4005cof_A mol:protein length:173 Uncharacterized protein  ali model follow..  2MSTKAELLLAIDKNFSKLISYLNTIPPEIMDGHAKGTEMSVRDLVSYLLGWNALVVKWIKGLPVDFPETGYKWNQLGLLAQKFYSDYSELSYELLVAELQTVKNEIVNLINDRTDDIGRPWYTKWTMGRMISFNTSSPYANANGRLRKWAK.......................................................................................................... 166
4 -30.8004n6c_A mol:protein length:183 uncharacterized protein  ali model follow..  6LRNKEELKAEIEKTFEKYILEFDNIPENLKDKRADEVDRTPAENLAYQVGWTNLVLKWEEDERKGLQVKTPSDNQLGELYQWFTDTYAHLSLQELKAKLNENINSISAMIDSLSEEELFATKTATWEVYKFIHVNTVAPF-FRTKIRK............................................................................................................. 171
5 -30.7005cog_A mol:protein length:191 IRC4  ali model follow..  11  7MRSKKELKEEIEKKYEKYDAEFETISESQKDEKVETVDRTPSENLSYQLGWVNLLLEWEAKEIAGYNVETPAPGNLGGLYQSFYKKYGIYSIKEQRAKLREAVNEVYKWISTLSDDELFQAGATTKAMWPVYKWIHINTVAPFTNFRGKI........................................................................................................... 167
6 -30.5005cqv_A mol:protein length:184 Uncharacterized protein  ali model follow..  10  6SRDKNELKEEVLKSYKKYIAEFNDIPEKLKDLRIDEVDRTPAENLAYQVGWTTLILKWESDEQSGLEVKTPTENQLGELYQHFTETYASLTIKELTAQLNDNVDAIGNMIDSMSDEV-SATKNAVWEVYKFIHINTVAPF-FRTKIRK............................................................................................................. 171
7 -29.6005com_A mol:protein length:183 Putative conjugative transposon protein Tn1549-like, CTn5-Orf2  ali model follow..  11  10.ENKEELKSEINKTFEKYIAEFDNIPESLKDKRIDEVDRTPAENLAYQVGWTTLVLKWEEDERNGLQVKTPSDEQLGELYQWFTDTYAYLSLQELKSKLNENINSIYVMIDSLSDEE............................................................................................................................................ 129
8 -29.0006anr_A mol:protein length:178 Colibactin self-protection protein ClbS  ali model follow..  1MASKEELIKAINSNFSLLNKKLESITPQLAFEPAKGTTISVANLVSYLIGWGELVLHWHDQEAKGKTIIFPEENELGRLAQKFYRDYEDITEYELLARLKENKQQLVALIERFSNDEGKPWYNKWTRGRMIQFNTASPYKNASGRLNKLQKCLAELE.................................................................................................... 172
9 -28.8002yqy_A mol:protein length:169 Hypothetical protein TTHA0303  ali model follow..  13  1MVTWDEALKRLEASRKALLALLREADPAWLSAPLREGAWTPLMVAEHVALVEDSTARVLRRLRRLAAGENLPPVDGKPQAPEGVRPKGGLSLEEVLALLDRARAFLLEEVAKADPQNPATFP-GELNPLGWLRAAAYHEAHHLKALQASLPR......................................................................................................... 169
10 -24.7002rd9_A mol:protein length:193 BH0186 protein  ali model follow..  11  17..QMNEAIQLLERTPKTLEVFLEGLSDSWHQCNEGYETWTVYEVVVHLIEAEKTNWIPR---LRFILQEGEHKPFPAFDRFSHLNQSNAVPISERFKEFQQLRKENLNTLRSLVQSEAAHPAFGVVKVRELLSAWVVHDLTHIAQIVRSMA.......................................................................................................... 168
11 -23.4001rxq_A mol:protein length:178 yfiT  ali model follow..  10  21KEQKDKWIQVLEEVPAKLKQAVEVMTDSQLDTPYRDGGWTVRQVVHHLADSHMNSYIRFKLSLTEETPAIRP---YDEKAWSELKDSKTADPSGSLALLQELHGRWTALLRTLTDQQFKPDTKEIITLENALGLYVWHSHHHIAHITELSRR......................................................................................................... 174
12 -22.8003cex_A mol:protein length:172 Uncharacterized protein  ali model follow..  4MKVTQLSSETLDRAHERFEETLAQMTVAEANTMPAPLIKSVTWLMWHTARELDLQISALNHSDPLWLSDLPDETEDWHHTPEEAAKVVVAEKQLLSDYLAASVALTKSYLDQIKEEQLSDVITPPVTRQVRLVSAIDDAVMHSGQAV.............................................................................................................. 163
13 -22.1002ou6_A mol:protein length:190 Hypothetical protein  ali model follow..  17  32.PHIGALVEMLTYARLTTLQAVEGLPEDQLWATAPGFANSIGTLLAHIAAVERVYHVLSFQGRDVTPEDDGAAYWGLTMGKEGTAPARLPTLDELRAELADARAETLRVFAAKDDAWLAEPLGPGWANQHWAWFHVMEDEVHRGQLR.............................................................................................................. 178
14 -21.9003dka_A mol:protein length:155 DinB-like Protein  ali model follow..  2MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASP-----------------FQNKQEETETDLNVLAKTYTEKTVAILEQLTEEQLDREIGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPF................................................................................................. 150
15 -21.4003di5_A mol:protein length:168 DinB-like Protein  ali model follow..  12  3YQTIEGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFE----------------GETKDYPVPTSAKTIADGYRKVNTAFVEALQSEWTDKDLTTFGRPMPNSIFLMTLINHQNHHRGQMTVLMRQAGLTVPGV................................................................................................. 150
16 -21.3002qnl_A mol:protein length:162 Uncharacterized protein  ali model follow..  13  2MHTQEAALDAWNTQSSRTDKLIQSLSNEALAVETAPGRNSGTYLLGHLTAVHDAMLPLLELGDTLYPQLAPVFIQNPDKSGLEKP-----EINDLRLYWSLVQERLANQFNQLQPADWFNKHEPHRNKLSVLINRTNHMAYHLGQLA.............................................................................................................. 158
17 -20.6003gor_A mol:protein length:157 Putative metal-dependent hydrolase  ali model follow..  10  4MSRAKKWVQYFLSHRHVTMELIHKIDEAHYDYKPTPTSMTAKQLATHMLFSFYNFANTAKHGDP-----------------SLFRQKIEEPETNLAKLAETYTEKTRQLIESMSDDDLTAIFGTQMSTAQFLQLAMDHEIHHKGQLFVYVRGMGHTDLPL................................................................................................. 152
18 -20.6002p1a_A mol:protein length:154 Hypothetical protein  ali model follow..  4...VQSALHQLKVAVDTSIQMLDQYTEIDLKIAPIQSKRSLFEMYAHLSLICHADLLILNGSTE-------------KELHTFYKEQTPETIAQMQKTMIQGYDLLSKTFLSYSNEQ-TAYWGISYSRFEWLLEIVAHFYHHRGQIHILLCEHMKDPN................................................................................................... 149
19 -19.7002hkv_A mol:protein length:149 Hypothetical protein  ali model follow..  2MTDQQALDRHVGVGVRTTRDLIRLIQPEDWDKRPISGKRSVYEVAVHLAVLLEADLRIATGATADEMA-------------------QFYAVPVLPEQLVDRLDQSWQYYQDRLMATETTYWGVTDSTTGWLLEAAVHLYHHRSQLLNLLGYDIKLD.................................................................................................... 146
20 -19.4002f22_A mol:protein length:144 BH3987  ali model follow..  11  3......DTNGVLYAANMTNALAKEIPESKWDIQLIPELGTLRKLFIHIVRVRDVYRDGLKTG------------------SIKFPGRLASDEHRLLDELERSMEELVFEFKQTTFNS-IKMGENYLSIMELLGTVIQHEGIHQGQYYVALKQSGINLPKQ................................................................................................. 137
21 -18.6005wk0_A mol:protein length:163 Damage-inducible protein DinB  ali model follow..  10  1MTT-KTVFDVIDMGLGYLVNVYDAWKVEK-DYHKPFSNW----QFGHVLTIFESALAVAGKENIDLNIYRPL---FGNGSSPDEWKDEVPSIERILEGLQTLPERARNLTEDDLAIELKQPIVGCNNLEELLVLNAIHIPLHAGKISRILKNLKALE.................................................................................................... 157
22 -14.2002qe9_A mol:protein length:178 Uncharacterized protein yizA  ali model follow..  8NLYFQGMMKFFE-VRDQWFTWCHQLTTEELLKNRLGGVENILYTLFHIIDVEYSWIRAIQGKE-----------------DIAVQFADYQTLNKVKSLSNTFRTEIIDVLQTHSDQIKDELVGVLYTRDEILHHIIAHEIHHIGQLSVWARELKLSPVSA................................................................................................. 159

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.