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Query: gi|15607181|ref|NP_214553.1|(removed signalp:1-16) transmembrane protein (Rv0039c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst LFGSWSLCHTPTADPTALALRAMAPTQLAAAVMLAAGGVVAVAAPGHTALMVVIVCIAGAVGTLAAGSWQSAQYALRRETASPTANCVGSCAVCTQACHLast
1 -8.8103b8f_A mol:protein length:142 Putative Blasticidin S deaminase  ali model follow..  13  11..............VKQLIEQRYPNDWGGAAAIRVEDGTIYTSVAPDVINASTELCMGAILEAHKFQKKVTHSICLARENEHSELKVLSPCGVCQE... 94
2 -6.7403j7o_a mol:protein length:148 Ribosomal protein uL15  ali model follow..  14  107..GYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA....................................................... 148
3 -6.7005lzs_a mol:protein length:148 Uncharacterized protein  ali model follow..  14  107..GYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA....................................................... 148
4 -6.6804d5y_a mol:protein length:148 60S RIBOSOMAL PROTEIN UL15  ali model follow..  17  121................PVIVKAKFFSRRAEEKIKSVGGACVLVA....................................................... 148
5 -6.6203jcs_L mol:protein length:145 ribosomal protein L15  ali model follow..  27  109LLGNGHIQVP-------CIVKARYVSKLADKKIRKAGGAVVLQA....................................................... 145
6 -6.5805t5h_b mol:protein length:144 60S ribosomal protein L27A/L29  ali model follow..  29  108LLGNGHLQTP-------CIVKARWVSKLADKKIRKAGGAVVLQA....................................................... 144
7 -6.5303siu_B mol:protein length:254 U4/U6 small nuclear ribonucleoprotein Prp31  ali model follow..  19  140...................LSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLL-------------GAQRKTLSGFSSTSVLP................ 190
8 -6.4902joz_A mol:protein length:135 Hypothetical protein yxeF  ali model follow..  16  18.YGTWDEGRPGPTDGVKSATVTFTEDEVVETEVMEGRGEVQL---PFMAYKVISQSTDGSIEIQYLGPYYPLKSTLKR..................... 92
9 -6.4703gqu_A mol:protein length:169 NOP5P PROTEIN  ali model follow..  26  37...................LKALVGAKLGARLISLAGGLKELAMLPSSTIQVL.............................................. 70
10 -6.4603jct_a mol:protein length:149 60S ribosomal protein L28  ali model follow..  26  108..GYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA....................................................... 149

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.