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Query: gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYGLast
1 -37.500PF05258.12; Q02A53_SOLUE/3-88; Dna[CI] antecedent, DciA  ali follow..  25  1..........................................................................RASKLIRGL--RLSGEVITPEQLACAAWPEAVGKKIAGHTRASKLVRSRLVIEVEDHTWQKQLFALTRDILKNLEKTLGRGLVDDLEF......................... 86
2 -6.560PF00280.18; J3NE44_ORYBR/14-73; Potato inhibitor I family  ali follow..  13  2...................................................................................................ESWPEVVGLSIQEAKKVILKDKPGADIVAVPLGSPVTDDLRFNRVRIFVDTVAETPRV.............................. 59
3 -5.860PF01074.22; Q7PMM6_ANOGA/166-493; Glycosyl hydrolases family 38 N-terminal domain  ali follow..  13  30...........................................................................FANMLRHLDENAGMRFIWAEISYFAQWYDKLAAEQKDIVKRL-VKKRQLEFVTGGWVMPDEANSHWYSMLLQLTE--GQTWLQT-------------------NVTPVDPFG 126
4 -5.800PF17241.2; A7TTH5_VANPO/255-450; Family of unknown function (DUF5314 topsan)  ali follow..  1............................................................................SNLRTQVMNRAYIPIKLSDTQNYDIWFHYFIRVVGRTSP-EYVETGDI-YGFTDAHINSIKDDLDFYLISLIINSVSKEIGKNIETSFFTTKTDGPTGLLL-----KCKYA 121
5 -5.560PF07154.11; B2J4L5_NOSP7/1-149; Protein of unknown function (DUF1392 topsan)  ali follow..  11  14.................................................................................................LSPPWGQTMPPLAVQILEEVFLSSSDLPVHWEGQEWVYAIFCLGEILYLSSKEFHPTNVFKNGVVPTS...................... 86
6 -5.400PF05412.12; RPOA_LDVC/381-487; Equine arterivirus Nsp2-type cysteine proteinase  ali follow..  15...........................................................................ISAMLNDIFGDSFTTRLGKCSRDSSEWDQDLYQLVMTANLPATIGSAIYKLDCVNQHWTVTKR--GDRAVGRLAPDCLRGVCGECEM......................... 105
7 -5.390PF12615.8; Q93GL8_SALTY/31-128; F sex factor protein N terminal  ali follow..  14  3.................................................................................................LFIFFWILVGLVLWVKLSWQTFVNGGIYLIKSQPVYGQTFRMNAAQVLDKYTVWCGEQLWSAFVLAA....................... 86
8 -5.390PF11922.8; R5UQA1_9BACE/241-421; Domain of unknown function (DUF3440 topsan)  ali follow..  12  30...................................................................................................NTWGKMVGVNFTGMYGGTHAMGWQSVKLPEGYTWREFMYFLLSTLPERARKNYLRKLSVSVN.......................... 95
9 -5.340PF04937.15; B9S003_RICCO/345-496; Protein of unknown function (DUF 659)  ali follow..  12  12.....................................................................QEEIATIKNYLFEYKAS----AVTGCSILADSWVDVEDRTLINLL--VSCPHGVYFVASVDASNMLEDASSLFKLLDKVVEEMGEENV--VQVITENTPSYKAAGKMLQEKRSN.... 118
10 -5.330PF06931.11; E4RF3_ADE02/4-116; Mastadenovirus E4 ORF3 protein  ali follow..  14  4.........................................................................LKVEGALEQIFTMAGLNIRDLLRDILIRWRD--------ENYLGMVEGAGMFIEPEGFSLYVHLDVRAVCLLEAIVQHLTNAIICSLAVEFDHATGGER............... 97

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.