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Query: gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRLTHPTPCPENGETMIDRRRSAWRFSVPLVCLLAGLLLAATHGVSGGTEIRRSDAPRLVDLVRRAQASVNRLATEREALTTRIDSVHGRSVDTALAAMQRRSAKLAGVAAMNPVHGPGLVVTLQDAQRDANGRFPRDASPDDLVVHQQDIEAVLNALWNAGAEAIQMQDQRIIAMSIARCVGNTLLLNGRTYSPPYTIAAIGDAAAMQAALAAAPLVTLYKQYVVRFGLGYCEEVHPDLQIVGYADPVRMHFAQPAGPLDYLast
1 -63.000PF05949.12; F6B3E0_DESCC/87-231; Bacterial protein of unknown function (DUF881 topsan)  ali follow..  26  1.....................................................................................................ELVKVRQAAGLTSMQGPGVEVTIAPIKKG------DSAGDNLFTVRDEDLLRVVNELRAAGAEALSINGQRIISTSEIRLAGAFIDVNLTRLSPPYVVSAIGPAGQLESSLLIQGG---LVDTMQEWGIAVTVVKKDKIIVPAYSRSINLEYAK....... 145
2 -7.450PF14584.6; D4J4Y6_9FIRM/15-164; Protein of unknown function (DUF4446 topsan)  ali follow..  11  6........................SLILTVVAIVLVIMLVLRQSRLEMN-MKGKNGKTLEDTFKAQFDDIDLVKEQTDLLHKRMMYVEKSLNRSYQKCGVVKYDAFKELGGLLNDSNTGFVMNIHSREGSYTYIKDIVRGECELPLSEEEAEAVKNAI........................................................................................................ 150
3 -7.070PF16378.5; D4IKB8_9BACT/25-198; Domain of unknown function  ali follow..  1..........................................................LWDAIDDLKSRVQALETQVDALNGNIEALQKLYGGATISKVET--------------SDGKYLITLTNGETIELVQGSEAEAVIPIVSINDKGEWQVST--FTSLGVKAVAEDGTTPRFRIDEATGYWQVSYDGGTSFENVKDTKGQPVKAIGSGTVTDKFFEEVKVDGGDLYIRLLGGEELRIP................... 174
4 -6.770PF04361.13; SMG_AERHH/1-157; Protein of unknown function (DUF494 topsan)  ali follow..  14  1.................................MFDVLMYLFETYIHSDADVMVEQNELTDELSRAGFDKDEIEKALNWLERLANLHDSEREVYVAASAQGSMRIYPQELARLSTECRGFLLFLEQAQ----------------VLNAETREICIERLLELDKPDIELDDLKWVVMMVL................................................................................... 131
5 -6.650PF08286.11; K2RMW8_MACPH/84-197; Spc24 subunit of Ndc80  ali follow..  12  3....................................................DTEKFKVAKQVSDLEIEEERLAQELDRLKGELEEVEAQGVQGGDLKKANLNATETDLLKLYVYRNLSIHPETDAAGNYTKATIHNTKKGDAHIVTLDPQFSYADYIWN...................................................................................................... 113
6 -6.620PF13353.6; D1BLW3_VEIPT/12-149; 4Fe-4S single cluster domain  ali follow..  10  1..................................................................................................................ANGEGIRTSI--------FNEEYQDFNAGKVWTQAETDLVVSYVKNPTCSGLTLGGEPFQNVQGLLPVVRAVRAAAPKAYSGYEIDDILEDELRSALLQEIDILVDGRFVDELKDPALRFRGSSNQRI.................... 137
7 -6.370PF12732.7; F8EDB6_RUNSL/8-87; YtxH-like protein  ali follow..  1.............................VLGLATAAAAGAVIGLLFAPEKGTEIRDKVRETANGFASDLLDALQRGRQQYTDIKDNVEDKAKELKSKADEKITEVK........................................................................................................................................................... 78
8 -6.170PF04612.12; YGHD_ECOLI/24-177; Type II secretion system (T2SS), protein M  ali follow..  13  10..................SPREKGMLLAAVVFLFSVGYYVLIWQPLSE------RIEQQETILQQLVAMNTRLKNAAPDIIA-ARKSATTTPAQVSRVISDSASAHSVVIRRIADRGENIQVWIEP-------------------VVFNDLLKWLNALDE--KYALRVTQIDVSAAEKPGMVNVQRLE.......................................................................... 151
9 -6.100PF09911.9; Q834H0_ENTFA/23-210; Uncharacterized protein conserved in bacteria (DUF2140 topsan)  ali follow..  10  6.........................AFLVLVGLIIGSVAFVTFRATQVRE---PDLKKIPAIVEKEGEPVVTIQSKKQQVNKLIDFYLADFQKGSEIKYKFYLENDALLNGTFQVLGHDIPFYLYFDPYVMANGNAKSLSIGTLGLPIKEVLKFAKR--NPDDQTVLLRLDQFRMQNGLFVRAEKINLVDDDIRMNIYL............................................................... 188
10 -6.040PF11382.8; A1TA82_MYCVP/1-311; Copper transport outer membrane protein, MctB  ali follow..  12  8..........................AISLAAVFLALAIGIALGSG----LSNTVLSGLRDDKQDMRQQIDTLTEDRNALNEKLSAAGDFDAQVAPRILRDAL------------ADKSVVIFRTPD------------------AADNDVDGLTRLVTQAGGTVTG............................................................................................... 115

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.