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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -92.700PF01098.19; SP5E_BACSU/10-366; Cell cycle protein  ali follow..  31  2............................................LLVIITLLLLTIGLIMVYSASAVWAYKFDDSFFFAKRQLLFAGIGVIAMFFIMNV--DYWTWRTWSKLLMVICFFLLVLV-LIPGVGMVRNGSRSWIGVGAFSIQPSEFMKLAMIAFLAKFLSEKQKNITSFR-----------RGFVPALGIVFSAFLIIMCQPDLGTGTVMVGTCIVMIFVAGARIAHFVFLGLIGLSGFVGLVLSAPYRIKRITSYLNPWEDPLGSGFQIIQSLYAVGPGGLFGMGLGQSRQKYLPEPQTDFIFAILSEELGFIGGTLILLLFSVLLWRGIRIALGAPDLYGSFVAVGIISMIAIQVMINIGVVTGLIPVTGITLPFLSYGGSSLTLMLMAVGVLLNVSRYSR........................ 356
2 -10.000PF04932.15; Q7UWZ2_RHOBA/233-380; O-Antigen ligase  ali follow..  10  1...................................................................................................................................................................................................LSSITCVAGLLLNGSRGGVVAALFGLVFAFGYVRPRRGLLAVVIAISVAILTVPMQLNLESITRLEMISANADTLQKDGRLLHDGWNAAMAYLPMGSGISTSPGPWFEHADNLWL---MLVETGLPGVAIA............................................................................................................ 147
3 -6.970PF02932.16; L8HNU3_9CETA/252-488; Neurotransmitter-gated ion-channel transmembrane region  ali follow..  12  1......................................................................................................................................................................................................................................................................................................................................ILVPCVLISFMINLVFYLPADCGEKTSMAISVLLAQSVFLLL--ISKRLPATSMAIPLIGFLLFGMVLVTMVV-IVLNIHFRTPSTHV.................... 90
4 -6.140PF17228.2; F9UBL6_9GAMM/23-121; Sulphur globule protein  ali follow..  17  1......................................................................................................................................................................................................................................................................WWGPGAGGYGPGYSGLGDAMGDMFGDGYGDFNFGMSGGGSGRGYGRGLGRGYGNGYG................................................................................................................... 58
5 -6.100PF13425.6; R7L2W3_9CLOT/8-429; O-antigen ligase like membrane protein  ali follow..  9  40..........................TLFLIYGLGYLIFVDKENRKWNFILLGLFAVTIIANIVFTLSSFSMSALMNKAVSMTKYMCLPVTLFFLYRYLKNGNEFSLKTLVYSAGIYATAILISAIT-GTALPTYDTAPERGISGWIYSGNELSAMMSLFYPIVIYYAAKY-----------------KSLSFMFILAVMTYGLLV----IGTKTALIGLIGAILGIIAKSTLIITLILTVAVAIAMPYSPSYKYIEGKINKIINQSKNPDGEENNQSSVENLIFNG-LIGLKDETGNYTVVERDFHDVKFG-----YGIIGLGIYLVPIFIIAISFFIRLFKNFKEEFTVRNFCVGLSGLLGIGIAY--------IVGHVL-------APTVAMFLGAVFIKFNDRQNKE....................... 422
6 -5.800PF15968.5; REXB_LAMBD/6-144; Membrane-anchored ion channel, Abi component  ali follow..  16  31...............................................................................................................................................................................................................................................................................................................SAHRDGLGATLSSYAGTMIAILIAALTFLIGSRTRRLAKIREYGYMTSVVIVYALSFVELGALFFCGLLLLSSISGYMIPTIAIGSASFIHICILVFQLYNLTREQE........................ 139
7 -5.250PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan)  ali follow..  15  2...............................................................................................................................................................................................................................................................................................GLLSRFLT------APDRHP-YVY-----DIALIAISILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVS-EIADTVAAVS--LPAAGLMFSAIAVGGGAVILASMTLGFLMSLHRVTYQYLSNREQWKQQKKLEQVE..... 154
8 -5.190PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  17  18.....................................................................................................................................................................................GPPLSSSLGLALLLLLLALLFWLYIVMSDTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGALCILL--------------------------LMITLLLIALWNLHGQALFLGI----------FIF----------GCLLVLGIWIYLLEMLWRLGATIWQLLAFFLAFFLDLILLIIAL------------------YLQQNWWTLLVDLLWLLLFLAILIWMYYHGQRHSDEHHHDDSLPHP..... 204
9 -5.170PF07271.11; P32_MYCGA/2-289; Cytadhesin P30/P32  ali follow..  14  1......................................................................................................................................................................................................................................................................................................................FSLKKLKSKLVGVSFV---------------------FSGVIALGTGVGLTSELVLHEG-SVGPRKITSEPYPVVG-AGAGLIVVSLLLGLGIGIPIAKKKERMMIQEREEHQKMVESL..... 109
10 -5.020PF02338.19; I1PPZ6_ORYGL/184-320; OTU-like cysteine protease  ali follow..  12  1..............................................................................................................................................................................................................................................................................................................PDGHC--LYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAADFLPFFLSEGKVESGPDPLESFKRYCEEVESTA------AWGGQELGALTHCLKKHIVVYSGSFPDVEMGKEYKLDSGGKDGPSIR.. 123
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;