current user: public
If you have questions about the server, please let us know.

Query: gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400
# Score Template Links and tools%idFirst MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPGLast
1 -51.600d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  20  2............LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQVVSEGECTVSTKTLNDIVRKLPDSELTLTDGTTGLEIKGKNCKFNLFTLPVSSFPAMDSI.............................................................................................................................................................................................................................................................................. 122
2 -51.000d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  23  1............MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAEISGEARFVVPGDVIQKMVKVLPDEITELSLEGDALVISSGSTVFRITTMPADEFPEIT................................................................................................................................................................................................................................................................................ 119
3 -49.400d4k3la1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  34  1............MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVAVQPHEPGATTVPARKFFDICRGLPEGAIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD............................................................................................................................................................................................................................................................................... 121
4 -49.300d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  27  1.....................................................................................................................................................................................................................................................................KRVIPETFKTKVVVSRKELRESLKRVMVIAKGSESVKFEIEENVMRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDIS------------------GYLYIVMPIRLA. 123
5 -48.700d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  1.....................................................................................................................................................................................................................................................................RRVLPKNPDKHLEAGCDLLKQAFARAAILSEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQ------------------SAAYVVMPMR... 121
6 -48.200d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  27  2......................................................................................................................................................................................................................................................................RVIPRDNAKILTLDNDLFAKAVDRVATISEKSRSVKLAVEPGRITLTVRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPVDP------------------GVKYVLMPLRV.. 122
7 -46.900d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  25  2....................................................................................................................................SEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPS--HSVIVPRKGVIELMRMLDGGDN------PLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY............................................................................................................................................. 122
8 -45.800d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  26  3....................................................................................................................................SGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIEN---EEEASFLLSLKSMKEVQNVLDNTTE-----PTITVRYDGRRVSLSTNDVETVMRVVDAEFPDY............................................................................................................................................. 123
9 -45.300d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  20  1.....................................................................................................................................................................................................................................................................STFIPESSSSKLVINRKMFADSIERIAIITEKFRAVKLSLSRETLEISAVGEARGNAKEVINSSQDDESLAIGFNPQYLEDVLKAVKSDVVELYFSDVSAPVLIKFPENP------------------KDIFVVMPVKV.. 131
10 -45.100d5w7za2 d.131.1.0 (A:123-248) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  20  2....................................................................................................................................PEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKEFCSASTDGHRLSISWVTLEKQIKN--FGVILPQKSAEEILKIVKDPKNIN---EDIEILLSSNKIKFICNNTSMLSKLIDGTFPDY............................................................................................................................................. 126
11 -40.800d5wcea2 d.131.1.0 (A:119-250) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  19  2.............................................................................................................................MSSDGL--SSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTGETKLRAVATDGHRLALAEMPAPEGAVG-IPGVIVPRKTIAEARRLMESAGE------TVDLQVSPQKVRFEFGAAALTSKVIDGAFPDY............................................................................................................................................. 132
12 -9.940d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  1.........................................................................................................................................................................................................................................................................PEELPAKIVMDAGEFKKAIAAADKISDQ---VIFRSDKEGFRIEAKG-DVDSIVFHMTETFNGGEARSMFSVDYLKEFCKVAGGDLLTIHLGTN-YPVRLV----------------ELVGGRAKVEYILAP-RIES 122
13 -9.240d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  2............IDVIMTGELLKTVTRAIVA---------LVSEARIHFLEKGLHSRAVDVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSITKDLVELIVEDSTLKVKFGSVEYKVALIDPSAIRKEPRI.............................................................................................................................................................................................................................................................................. 122
14 -9.140d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  21  1.........................................................................................................................................................................................................................................................................PEPFTAKVVVLGEVLKAAVKAASLVSDS---IKFIARENEFIMKAEGEKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGADEVTIKFGNE........................................... 99
15 -9.120d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  23  1...........................................................................................................................................................................................................................................................................EFDIKATINASGLKNAIGEIAEVADT---LLISGNEEKVVVKGEGEEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKSDYVKVAFADQ-KPMQLE-----------------NMEGGGKVTYLLAP-KLS. 119
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.