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Query: gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLVVQANQDQGVPWDLTSYGLAFLTLFGSAHLAIRRFAPYTDPLLLPVVALLNGLGLVMIHRLDLVDNEIGEHRHPSANQQMLWTLVGVAAFALVVTFLKDHRQLARYGYICGLAGLVFLAVPALLPAALSEQNGAKIWIRLPGFSIQPAEFSKILLLIFFSAVLVAKRGLFTSAGKHLLGMTLPRPRDLAPLLAAWVISVGVMVFEKDLGASLLLYTSFLVVVYLATQRFSWVVIGLTLFAAGTLVAYFIFEHVRLRVQTWLDPFADPDGTGYQIVQSLFSFATGGIFGTGLGNGQPDTVPAASTDFIIAAFGEELGLVGLTAILMLYTIVIIRGLRTAIATRDSFGKLLAAGLSSTLAIQLFIVVGGVTRLIPLTGLTTPWMSYGGSSLLANYILLAILARISHGARRPLRTRPRNKSPITAAGTEVIERVLast
1 -6.400d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  15  5...............................................................................................................................................................................................................................................................................................................................VVNVIIPCLLFSFLTGLVFYLPTDSGEK----MTLSISVLLSLTVFLLV--IVELIPSTSSAVPLIGK---LFTMIFVISSIIITV............................. 83
2 -6.330d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  17  4....................................................................................................................................................................................................................................................................................................................YVINFI-----LISFLASLAFYL-------------PAESGEKMSTAISVLLAQAVFLLL--TSQRLPETALAVPLIGYLMFIMSLVTGVI-IVLNFHFRTPS....................... 94
3 -6.080d3fw3a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), isozyme IV [TaxId: 9606]}  ali model 3D-neighbors follow..  10  82.............................................................................................................................................................................................................................................................................GLPAPYQAKQLHLHWSDLPYKGSGEHFAMEMHIVHEKEKGTSRNVKEAQDPEDEIAVLAFL-------VEAGTQVNEGFQPLVALSNIPKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSDEKVVWTVFREPIQLHREQILAFSQKLYYDKEQTVSMKDNVRPL 251
4 -4.990d2pw8i1 g.3.15.2 (I:3-65) automated matches {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]}  ali model 3D-neighbors follow..  25  1..........................................................................................................................................................................................................................................................................YTDCTESG----QNLCLCEGSNVCGQGTGEGTPK--PQSHNDGDFEEIPEEY.................................................................................................................... 61
5 -4.920d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  11  2..........................................................................................................................................................................................................................................................................................................................................................EMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMR. 88
6 -4.780d4e9ox_ b.74.1.0 (X:) automated matches {Vaccinia virus [TaxId: 10245]}  ali model 3D-neighbors follow..  10  55.............................................................................................................................................................................................................................................................................FLPNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINNKKKYSSYEEAKKHDDGLIIISIF-------LQVLDHKNVYFQKIVNQ-LDSIRSANTSAPFDSVFYLDNLLPSKLDYFTYLGTTINHSADAVWIIFPTPINIHSDQLSKFRTLLSLSNHEGK..... 210
7 -4.760d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  13  11...............................................................................................................................................................................................................................................................................DAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDF---------DTQSPVKPYLGARLSLN-SIGLGVLTGVSYAVTPNVDLDAGYNYIGKVNTVKNVRSGELSAGVRVK.......................... 154
8 -4.720d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  6..............................................................................................................................................................................................................................................................................................................PKRSDEPVFWGLFGAGGMWSAIIAILLVGILLPLGLRVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYG-LAAILTVVTLIGVVTI............................. 119
9 -4.610d4u3da1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  9  12................................................................................................................................................................................................................................................................................................FEGVGIHTGEYSKLEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNV--------------TIEVIGNEIPILDGSGWEFYEAIRKNILNQNREID.......................... 121
10 -4.510d1uzka3 g.23.1.1 (A:1529-1604) Fibrillin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  7..............................................................................................................................................................................................................................................................YLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPC-----EMCPAVNTSEYKILCPGGEGFRPNPITVIL......................................................................................................... 76
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.