current user: public

If you have questions about the server, please let us know.

Query: gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv], from M.tuberculosis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .
# Score Template Links and tools%idFirst MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYGLast
1 -80.100[R] COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives  ali follow..  70  1MIESNESYGGDTIEPLGTLSGFDLVRRALEEARAAACAQGKDAGRGHVVPPVPFRVTDRRRNWSGPGPDVRDPQPLGKVAHDLAKKRGWSAQVAEGRVFGQWASMVGGQIADHAFPVGLNNGVLSVTAESTAWATQLRIMQAQLLAKIAAAVGNGVVTSLKITGPTAPSWRKGPWHIAGRGPRDTYG 189
2 -36.100[S] COG5389 Uncharacterized protein conserved in bacteria  ali follow..  19  2................................................................SEPNPKRGLRPLADMASGLVDPVLRKRAGINLALLQAWEDIVGPAIGASSRPLRILTPATLVIACEGFAALQIQHETGEIISRVNGFLGFAAIGRIRIKKPPVIAVKRRVKRLASLGPAEE.. 134
3 -28.800[S] COG4701 Uncharacterized protein conserved in bacteria  ali follow..  11  2....................................................................RDHRPTATDELIQASKLKQIQEHAKAILLINRQLQDILPKGLKTQVRAANVRGGNLVLEAASAALKMKVDYERLHILTQLRQNGFGHLISEVRVNPELYRQSKITSEDARAANPR.... 117
4 -7.390[S] COG2881 Uncharacterized protein conserved in archaea  ali follow..  11  100......................................................................ANPEILVKSLVSHFPDSYVYSAIFLNLAVTAWSFLIWTFALKNARNVELKQAAVCAAIPTAIF---GVYQVMALVRLLQ...................................... 175
5 -6.030[R] COG5271 AAA ATPase containing von Willebrand factor type A (vWA) domain  ali follow..  165....................................................................KKFLITQIAAKLGQQIIRIHLSDSTDP-------KMLIGTYTSPKPGEFEWQPGVLTQAVITGKWFTNIEHAPSEVLSVLLPLLEKRQLGSFQMFATSSMKTKILGQR........... 279
6 -5.970[K] COG5123 Transcription initiation factor IIA, gamma subunit  ali follow..  13  17.........................................................................NSLVDALDTLISDGRIEASLAM-RVLETFDKVVAETLKDNTQSLTVKGNLDTYGFCDDVWTFIVK................................................. 81
7 -5.860[K] KOG4479 Transcription factor e(y)2  ali follow..  11  1MVEDKKKAEEMKMVETEKMVETK----KKARRMKHSVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRI----------ACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL.............................. 143
8 -5.780[S] COG1627 Uncharacterized protein conserved in archaea  ali follow..  12  12.....................AEDIEEKIRRLRELGRIVTETEEQPPTPGPPKPPRRRVSRIGTFRERERRKRIIIGALVLTII--------------------IVGAVISIYTYMESKAAREL--ENAKRAKIAEVNKCKVQLINKILAAKNVEEVMSINVKAICEKRKQE............... 150
9 -5.660[N] COG1580 Flagellar basal body-associated protein  ali follow..  11  1MAEKDSIGDIADDFEEQLVAPAADRVGFLPGAVIFIVTVVTATALVLAKQGSSHTAYPVSQEFRESRELLQYYESVGLIRTNTADALPGTVVVSVALGYPLNDKTAQQELSARLV--ELKDFLRSYFQRKTL--SELR-VKIEIRNEINDNVSRSKVKDIRFT........................ 175
10 -5.630[R] KOG4700 Uncharacterized homolog of ribosome-binding factor A  ali follow..  43......................NWLKKFASKTKKKVWYESPSLGSHSTYKPSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDL-LCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFV........................ 182

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.