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Query: gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEALAWSGLWVAVSCLFAGWLYFELAGNPGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVFLMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVQQFEWILYLFGAFLLYTGIHMMKPEGDEKEDLANSRLLNTVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMIELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLAFVLGFIGVKMLVMHWVHIPISVSLSVVFGALGASVLTSLVYTKKTGRLast
1 -66.200[P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance  ali follow..  13  1.......................................................................MEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKL--PPGQRDRARITGLILAMIMRLLLLASISWLVTLTKPLFSVQALSFSARDLIMLFGGFFLLFKATMEL-------------NERLEGKDSANPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVIIAISLMLLASKSLTRFVNNHPTIVILCLSFLLMIGFSLVAEGFFHIPKGYLYAAIGFSVMIEALNQL........ 230
2 -51.200[S] COG2899 Uncharacterized protein conserved in bacteria  ali follow..  17  5.......................................SAQTTALGYFKWAFIVTAAGLLLGGWLGWQSTGTIGGMMTVFFICTVLAVLEISLSFDNAIVNANKLKDM--TPVWQQRFLTWGILIAVFMRIVF--YSRIMLEAHLPIAAFGGTFLMMVGLTYFFDHEKDEEAVVFVHACVYGLLTFLAVEVVGGLLDASQQTMSAAAKGGFGAFLYLEVLDASFSFDGVIGAFALTQNLFIIAIGLGIGAMYVRSMTIMLVGTLSEYRYLEHGAFYAILILSVVMYFQTLIHIPEVITGLGGAGLIGLSLWSSIRHNRREME 351
3 -15.300[S] KOG2881 Predicted membrane protein  ali follow..  14  71.................................................................................ASFSVIVVSE-----DKTWFIAVIMS-----MRHSRLTVFSGAMGALALMTVLSACLGWITQVIAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVAKREGELDAGKFEMLEGGGGVASEAFSLTFVAEWGDRSQ----TTIILGARENIAGVIGGGILGHALCTGIAVIGGKIVAQRRTVTLIGGVVFLLFALSALFIND................................ 290
4 -9.460[P] COG4300 Predicted permease, cadmium resistance protein  ali follow..  18  8..................................................................................NVVTSIILYSGTAVDLLIILMLFFA--KRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIKEILGLLGLIPILLGIKVLLLGDSDGEAIAKEGLRKDNKN---------------------------LIFLVAMITFASCGADNILANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKY---RWFVAVVYLGLGIYILVEN................................. 197
5 -9.440[S] COG2119 Predicted membrane protein  ali follow..  22.................................................................................ISITTVALAE-----DKTQLLSLLLAS----RYRKPIPIIAAIFLATLANHALAAWLGVVVADYDILKWVLVVSFLAMAGWILIPDKLDGEESIST---------------------------RGPFVASFIAFFMAEIGDKT-QIATSILGAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADKGLIRKVTAGLFLLMALATAF................................... 199
6 -9.360[S] COG1971 Predicted membrane protein  ali follow..  12  2.................................................................................IHLVSLLALAFAVSLDS-FGVGLTYGLRKMKIPFKSLLFIAGCSAVSILIAMGFGMTIQQYLSPAIAESLGGIILILIGCWALYQAFRPAKNGHKTKDDHVILNFEIKMLGVVIRILRKPMVADFDNSGAITGREAV-ILGIALSLDAFGAGIGAAMAVSVAVMSALFVSLGMKSGYRFADSYWIKRFSFIPG--LLLVLIGVFNLM................................... 212
7 -9.350[R] COG1279 Lysine efflux permease  ali follow..  16  9...................................................................................LALGAAMILPLGPQNAFVMNQGIR------RQYHIMIALLCAISDLVLICAGIFGGSALLMLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAEVLK-------------------QGRWKIIATMLAVTWL--VYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRIINLVVGCVMWFIALQLARDGIAHAQALFS........................ 211
8 -9.000[E] COG1280 Putative threonine efflux protein  ali follow..  11  10...................................................................................IPTFFFVSITPGMNMTLALTLGMSV-----YRRTLWMMVGELLGVALVAVSAVVGIAAVMLFTLFKIVGASYLVYLGVQMWRSRGKLAINIEQE------------------------NTYQGSDWGLLVQGFVTAIANWAFMVSLLPPFISLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLRLLNRIAGSLMAGVGIWLYFS.................................. 206
9 -8.280[P] COG0672 High-affinity Fe2+/Pb2+ permease  ali follow..  372............................................................................GETDWSLFVYSLLIIVREGLEALLIVAAIVAYLKNNHQDKLPLIRQSVVVALIASVLTAFIFQWLFANS-FTMMIAVVMLFSMSYWLLSKAEARN-------------------KAYLEGKFAKSLSSGSIIGLWLTSFLAVEGAETVLFYLALIGDANTTSGHLSVLAGFGVGCVILLVAYLVMRFTVVKLPLFFIFTGGFMYLMAFVFAGKSVLELIEGIPQGVLLIAALVALWVMQWRSRTVHR 639
10 -7.770[P] KOG4505 Na+/H+ antiporter  ali follow..  74...............LARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPR------------LSFLESLAIAACITTDPVLASSIVKFARRVPGHLRESGCNDGMAIPFLYLAIYLIIEKPILYEC--FGCVLGAIIGVIARKMIKFSERRGLMDRE-----------------------------------SFLVFYFVLALFCGGIGTIIGVDDL---LVSFCAGAAFSWDSWFSKKTEESHVSNVIDLLLNLSFFVY--VGAIMPWPQFHMPHMDLSVWRLVVLAICILIARRI....... 342

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.