FFAS03 results for 77358703

Query: gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 .`
#	Score	Template	Links and tools	%id	First	`MAEGQKSAVTEYYLNHGEWPGNNTSAGVASSSTIKGKYVKEVTVANGVITATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRTDAKADTVAAAAKTADNINTKHLPSTCRDASSVVCIETPPTAFYKNT`	Last
1	-28.000	`[NU] COG4969 Tfp pilus assembly protein, major pilin PilA`	`ali follow..`	73	46	`LAEGQKSAVTEYYLNHGEWPSNNTSAGVASSTDIKGKYVQSVEVKNGVVTATMASSNVNNEIKGKKLSLWAKRQDGSVKWFCGQPVKRNTTNDDVKADTAANGKQIDTKHLPSTCRDAASAG.............`	170
2	-6.870	`[M] COG3770 Murein endopeptidase`	`ali follow..`	15	282	`.................................................................................CDKSTDEPWKPAKPSGKPAKKPKPVMVSDLPKACAAVLNGPAPNSIADVTYGT.`	339
3	-5.730	`[A] KOG0796 Spliceosome subunit`	`ali follow..`	18	28	`.....................................................................................................YDRDVCRLYLSGLC------------PHELFQLT`	49
4	-5.600	`[J] KOG4639 RNase P/RNase MRP subunit POP5`	`ali follow..`	12	28	`IFQELMKLTSEMF---GDFGYSILKMSLSVRVLDEDVIV--LRVAEGGNKYFGAILPCVHKIDKQPMVLQTIFIGRSMR........................................................`	101
5	-5.460	`[T] KOG4039 Serine/threonine kinase TIP30/CC3`	`ali follow..`	12	47	`LAVEVRSLFEECYTKRIDRIVAT--------------YGEIRYLHDGTILLL--------------VTIHNITNQPMIDWVISINPTSIFPNSSSSCCQTINVGSL----LPGIRKTFQCQLTCKDPPV......`	149
6	-5.150	`[C] COG1142 Fe-S-cluster-containing hydrogenase components 2`	`ali follow..`	10	17	`................................................................................TCEAACSETHRQHGLQSMPRLRVMLNEKESAPQLCHHCEDAPCAVVCPVNAITRV`	71
7	-5.120	`[S] COG4872 Predicted membrane protein`	`ali follow..`	9	9	`LGAAVIMLVAANWQEMPRLMRIGVIFVLIWASYLGGAWRQA-VFPAALYVLGAASFGAGIALVGQMYHISGDVYSAALYWTLGV...................................................`	95
8	-5.070	`[S] KOG4176 Uncharacterized conserved protein`	`ali follow..`	13	223	`.....QLTVNEYEPGHGIPPHVDTHSAF-------LDPILSLSLQSDVVMDFRRGDDVQVRLPRRSLLIM--SGEARYDWT-KHIDVVPSASGGLTTQARGKRTSLTFRRLPALCDTQQTKVPQELHASLAAQAI`	357
9	-4.880	`[S] KOG4725 Uncharacterized conserved protein`	`ali follow..`	22	10	`LAAA-KKKLKEYWQTNGSGPETATSGGGHSPGDSAPGVHGEGPTSSATL......................................................................................`	72
10	-4.820	`[J] COG1369 RNase P/RNase MRP subunit POP5`	`ali follow..`	8	53	`LSRALSEKMLSLFGECF--------AASGLRLEAFDGERGIVRCYREALDKVMVALTLMTHVGGVRVIPLTLGVSGTIK........................................................`	123

FFAS is supported by the NIH grant R01-GM087218-01

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