current user: public
If you have questions about the server, please let us know.

Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .
# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -24.800[NU] COG4969 Tfp pilus assembly protein, major pilin PilA  ali follow..  71  64WPSNNTSAGVASSTDIKGKYVQSVEVKNGVVTATMASSNVNNEIKGKKLSLWAKRQDGSVKWFCGQPVKRNDTATTN-DDVKADTAANGKQIDTKHLPSTCRDAASAG.......................................................................................... 170
2 -6.400[U] COG3843 Type IV secretory pathway, VirD2 components (relaxase)  ali follow..  17  577.....DQLGLSPGERIEGTLRRSVELASGKYAVI----------KSREFTLVPVARGEAISWTLGRQ................................................................................................................................... 649
3 -5.430[S] KOG4550 Predicted membrane protein  ali follow..  9  486..SQSAHLALQLPYNVLGNFLDHLYVGRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWS....................................................................................................................................... 553
4 -5.290[M] COG4520 Surface antigen  ali follow..  10  2LSACTTTGTRPAGGSLFGRSAQPSTPFLANLQGGIVGKDQTKALEAEYKALETAPVGTPVIWTGDDVKGQVVANAPYQVGNQNSHTLTVDGRDTRVRGAACRNDDGS........................................................................................... 120
5 -5.140[S] COG3123 Uncharacterized protein conserved in bacteria  ali follow..  11  20..SSTGRASVEGEYTFGTAEPEEMTVVSGALKVLLPGTVEWKVYTAGEVFNVPGHSEFHASYLC...................................................................................................................................... 91
6 -5.060[R] COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC  ali follow..  14  39.PAADTTIN-AAPEALTLGFSEGIELNFSGVKVTGPDNNVPANNTQLILPIGHALAAGKVSWHVVSVD.................................................................................................................................. 115
7 -5.050[J] KOG2726 Mitochondrial polypeptide chain release factor  ali follow..  12  248..SNGEEAGIKSATEIEGRYAYGYISGEKGT-QSPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVN-KVETAVRITHIPTRCTEERSQ-----------------------ANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVKAEWGQQIRN------FHPYKLVKDRTGH..... 421
8 -4.990[G] COG4813 Trehalose utilization protein  ali follow..  15  136.PRHPIAAGLPEHFELENEEMYGEQFSVPEPLETVFISWFQGG-AGNIFYFRPKVISNSVKWAYNPAGALKSIHDAPNVPVDKALEPIEERGPKLHQAGE.................................................................................................. 259
9 -4.900[S] COG3553 Uncharacterized protein conserved in bacteria  ali follow..  6  1MPSSRADVATEHASRYLQQLCKHWA-PTHGTIDLTSLGRTVMDADAAALHIVVSSDEATFDWK....................................................................................................................................... 93
10 -4.900[S] COG1971 Predicted membrane protein  ali follow..  10  143LSLDAFGAGIGAALIGFHPLYMAVSVAVMSALFVSLGMKSGYRFADSYWIKRFSFIPGLL.......................................................................................................................................... 202
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.