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Query: gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MAEGQKSAVTEYYLNHGEWPGNNTSAGVASSSTIKGKYVKEVTVANGVITATMLSSGVNKEIQGKKLSLWAKRQDGSVKWFCGQPVTRTDAKADTVAAAAKTADNINTKHLPSTCRDASSVVCIETPPTAFYKNTLast
1 -11.000IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  65.ITALKTNIEDYIATEGSFPATTAGTALGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANG---LWTCS--------------------TTVTSEIAPKGCTAGAT............... 165
2 -8.670IDP02679 Type IV pili fiber building block protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0889c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  47IIGNVKASIQNDINNNLDISQQTYDTP-------TGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVSGSTFQWTCSHNV---------------NASTLTASNVPHTCSSTFSA.............. 146
3 -6.490IDP92773 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09409 [Vibrio cholerae O1 biovar El Tor]  ali follow..  26..............................................................................QYRCGKGRYNNAKFLLGNFDTHVSRIRDQGDYAYNNIR---------CSHQENLKET 99
4 -6.490IDP92790 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36645 [Vibrio cholerae O1 biovar El Tor]  ali follow..  26..............................................................................QYRCGKGRYNNAKFLLGNFDTHVSRIRDQGDYAYNNIR---------CSHQENLKET 99
5 -5.820IDP05026 putative csfB protein [Bacillus anthracis str. Ames] BA_0025 [Bacillus anthracis str. Ames]  ali follow..  10  11.................................................................................CETERKEGI--------------YVYNNLICYECEKDMVNTETDDPKYIYYLKQ 50
6 -5.130IDP95010 Set165a_018 [Vibrio cholerae O1 biovar El Tor]  ali follow..  14  82..........................................................................................................QGDYAYNNIR---------CSHQENLKET 102
7 -5.100IDP05072 gene: spoIIR; stage II sporulation protein [Clostridium difficile 630] CD3564 [Peptoclostridium difficile 630]  ali follow..  13  40LKLKVRDEVIKYLQPKLQNSKSIKESEAIIKKEYSSNYSVKVGIQYSNFPTKQYSNIVLPAGEYKALKIIIGKGEGK-NWWC---------------------------MFPPLCFVDESNGVIDKSTDDKLKEV 161
8 -5.020IDP00404 gene: virG; needle complex outer membrane lipoprotein precursor YPCD1.48 [Yersinia pestis CO92]  ali follow..  12  14.........................VGCATPPMPAQRIVGEVRMSRPLSRIAHIDVSMFGLYEGKSIKLNPAQRGEGELYLRSTLSFPERGVQAVAQQKLTGKNKVVLQMIPKTC------------PNCQLPNT 130
9 -4.600IDP06470 gene: A1L; A1L [Monkeypox virus Zaire-96-I-16] NP_536538 [Monkeypox virus Zaire-96-I-16]  ali follow..  14  7......................................LPDVVISAPKAVFKPAKEEALACILPKYYKSMADMSVIDKCWFCNQDLVFRPISIE------TFKGGEVGYFCSKICRDSLASMVKSH-PLVFYEDK 113
10 -4.590IDP04273 gene: YPCD1.23; hypothetical protein YPCD1.23 [Yersinia pestis CO92] YPCD1.23 [Yersinia pestis CO92]  ali follow..  11  22ITMSIKAILLYSYQEYGQHTDVFIQVKFNYGMIEYKFYVNKVKFDDTPDRKLKTTIAHSSQLMGHNLTYE................................................................. 91

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.