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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -7.020IDP02679 Type IV pili fiber building block protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0889c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  60..NNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNDIIRLSGVVSGSTFQWTCSHN-------------------VNASTLTASNVPHTCSSTFSA........................................................................................... 146
2 -6.770IDP90298 bradyzoite-specific surface protein, putative [Toxoplasma gondii ME49] TGME49_120190 [Toxoplasma gondii ME49]  ali follow..  13  184LPISDKTFDVGKAAANPAVCQLTVNVKARASSVADENVSYGAESNSEALKVDMTTTRNTVTIDCGSEGT-VDILPNFVISWWKTPTPGNATIPAADFPESCVPNKAPQSDSQDTRVDNQSQVQSR......................................................................... 352
3 -6.700IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  89..TAAGFTRLGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANG---LWTCS------------------------TTVTSEIAPKGCTAGAT............................................................................................ 165
4 -6.240IDP04116 gene: sepZ; hypothetical protein Z5122 [Escherichia coli O157:H7 EDL933] Z5122 [Escherichia coli O157:H7 str. EDL933]  ali follow..  16  1MEAANLSPSMPLATSLSGN--NSVDEKTGVIKPENGTNRTVRVIAGLALTTTALAALGTIAAACSETSSTEYLALGITSGVLGTLTAVGGALAMKYA..................................................................................................... 99
5 -5.790IDP06418 gene: K1; K1 [Human herpesvirus 8] YP_001129350 [Human herpesvirus 8]  ali follow..  12  94.PVLQTFCGQPSNTVTCGQHVTYCSTSGNNVTVWHLPNGQNETVSQTKYYNFTLMNQTEGCYACSNGLSSRLSNRLCFSARCANITPETHTVSVS....................................................................................................... 188
6 -5.500IDP92662 hypothetical protein LPW_01811 [Legionella pneumophila 130b] CBW98325 [Legionella pneumophila 130b]  ali follow..  17  56..............PFYGI-CDGIIEDELEIIPIELKSFASKISLGQKMQLTAPCTRGYIITGEKAKAKLIKIDEKSKFKVIEICAKIKKIFGTETLPYSCI................................................................................................ 159
7 -5.200IDP02487 gene: metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4218 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  278FPADKTAVGCIDGRNIWRADLDEVL------------TTLQKQVQTKDLIVQPS---------CSLLHTPIDKTEETHLSTELFDALAFANQKLEELVLIHSALTQGTESISNELETYRNVHHTIRSSAARNREDVKA------------ARTALKEEDFSRPLPFEKRYELQQVALKLPLLPTT-----GSFPQTTE 443
8 -5.170IDP06320 gene: folE; GTP cyclohydrolase I [Streptococcus pneumoniae TIGR4] NP_344829 [Streptococcus pneumoniae TIGR4]  ali follow..  17  91IP-DGRVAGLSKLARTVEVYSKKPQIQERLNIEVADALMDYLGAKGAFVVIEAE--------MCMSMRGVRKPGTATLTTVARGLFETDKDLRDQAY..................................................................................................... 179
9 -5.170IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]  ali follow..  14  87IP-KEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAK--------LCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFM..................................................................................................... 175
10 -5.060IDP00500 putative copper resistance protein YPO1784 [Yersinia pestis CO92]  ali follow..  14  39.PAADTTIN-AAPEALTLGFSEGIELNFSGVKVTGPDNNVPANNTQLILPIGHALAAGKVSWHVVSVD.................................................................................................................................. 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.