Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst TYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNRLast
1 -5.740sp|P53674|CRBB1_HUMAN Beta-crystallin B1 OS=Homo sapiens GN=CRYBB1 PE=1 SV=2  ali follow..  10  203.................GYQYLLEPGDFRHWNEWGAFQPQMQSLRRDKQWHLEGSFPVLATEPPK.... 252
2 -5.230sp|Q8N9A8|TM188_HUMAN Transmembrane protein 188 OS=Homo sapiens GN=TMEM188 PE=2 SV=1  ali follow..  12  79....................GLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRPHVQ.. 125
3 -5.050sp|Q9BTA9|WAC_HUMAN WW domain-containing adapter protein with coiled-coil OS=Homo sapiens GN=WAC PE=1 SV=3  ali   41  138.HISSSGKK------------YY----------YNC------------------RTEVSQWEKPK.... 161
4 -5.030sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3  ali   32  257....................VMWQDGSVECNIRSNDLFPVHHLVVDKRVQSCPD............... 300
5 -4.970sp|Q9UHN6|TMEM2_HUMAN Transmembrane protein 2 OS=Homo sapiens GN=TMEM2 PE=1 SV=1  ali   20  2.................GHCFFLEDGIEQRNTLFHNL................................ 21
6 -4.970sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4 OS=Homo sapiens GN=FNBP4 PE=1 SV=3  ali   25  74.WDENTGCY------------YY----------WNT------------------QTNEVTWELPQ.... 97
7 -4.960sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3  ali   20  123QYDETSG-------YDPQTGLYYDPNS-AQSQQYLYWDGERRTYVPALEQSADGHK............. 177
8 -4.910sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1  ali   20  238...TSQG-TVVKYMLDGSTQILFADGAVSRSPNSGLICPPSEMPATPHSGDLMDSISQQKSETI..... 297
9 -4.830sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2  ali   21  163QYDESSGTTGL---YDPNSQYYYNSLTLYWDGEKETYVPAAESSSHQQSGLPPAKEGKEKKEKPK.... 233
10 -4.740sp|Q96EH5|RL39L_HUMAN 60S ribosomal protein L39-like OS=Homo sapiens GN=RPL39L PE=1 SV=3  ali follow..  21  18..................................KQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKL... 49
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.