Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: gi|15675969|ref|NP_273095.1| glycerate dehydrogenase (NMB0029) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MNHKKIVVLDADTLPGRVFHFDFPHELAVYGTTGADETAERVRDAHIVITNKVMISADIIAANPQLELIAVSATGVNNVDIGAAKAAGVAVCNVRAYGNESVAEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIRDLNGKTLAVFGRGNIGRTLAGYAQAFGMGVVFAEHKHASAVREGYVSFEDAVRAADVLSLHCPLNAQTENMIGENELRQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTNEPPKNGNPLLNARLPNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVVLast
1 -2.420HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  15  6................................................................................................................................................LREIFLSVIAFLA-GAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNL------FANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIG............................... 141
2 -2.390PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  12  25..............................................................................................................................................TDEKGCVSITIGLGDIAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQSYYDEALAENVPDAKEILHLAKGNFLTVDGLLKTLKVKDYKDVTASVLEDH...................................................... 191
3 -2.200HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  9  8........................................................SALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNL-------------------------YADRTLWNTMTREQQSLQVIRALSAIHPQWV----FAGLSAACVYGLQHGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSV-VTKLLKYANPLSENGGESLMRGQITELFGSSCWQCSS............................ 223
4 -2.130PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  5  2....................................................IEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGE-----LTAETMPLLTGEQHSLLAYQIF-------RDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLE--EEYLDIEEEVTALVASYVDDHLELFAKIV....................................................................................... 165
5 -2.060PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  15  2......................................................................................................................EGHEEVRTGRWDS-PFLLFYCNFLKGVFLLRIAVVD-GGIGKHITARLR------------------------QELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAI-----------GSLAIILADAMLGELTPAMAAAIAASPARKFLLPEVIGVTPEPLPHLIEALVNRVKFFYQEGGDK... 174
6 -1.830PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  24  12..................................................................................................................................................................................................INPEDIESQTILKDAAATALYGSRG----ANGVVLITTKSG.................................................................................. 48
7 -1.780HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  12  1..................................................................................................................................................................................................LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNL----ITGYSGLDPELDISNVQAPGVEYRDTYPTTRS................................................. 72
8 -1.500PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  12  52..............................................................................................................................................................................................PRWSLGRNARLLMVIPMDAETPG-------RLLRPQAQVME----EAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVHPWTLDR.............. 154
9 -1.340PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  14  2.......................................................................................................................................................................................................................................SVREG----ELLDEAVDFCRKRGLEFYAVNSNMPEEEADMSALRSRKVSADMYI................................ 51
10 -1.270PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  8  67..........................................................................................................................................................................NELVTGLSQSQSLSVPSWIDTTMLALGAGRMIWYTPACQRAMFFKTSSFTKDTFEAQGQLPTP--------GLVWLVMQGALYVYAYK--GSGRPDKETKLYQAPFFNVWSQGKVCTGNAAMPVGDNAAIPHMWVDAFFGSNFTH.. 201
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.