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Query: gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst TYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNRLast
1 -4.100HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  16  24..TSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQ........................ 66
2 -3.680PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  11  22................AGLILANELARRTKVGGIFCFLIVPAALTVYFIAIYVGAANGAEWNNPTYVH. 75
3 -2.780PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  19  85.................GTYQQLTDNSYKESIEKNIHLPLKYFIAKDLNGNELNTWFHETWKRVGMPAK 156
4 -2.750PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  22  102...EDRSQYSLRMVYGPGDVSYLDD............................................ 123
5 -2.570PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  19  47......GYTNVFDTY---SPQEYKGIEFRISRETMRMTT.............................. 77
6 -1.760PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  10  108.YRIYRKERYITIQEQD-RDSFVRAGFSSDLIRYDAM------------------VYMYELQSAMVKS. 157
7 -1.700PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  13  72....................VYYDDEELDRTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQMPI.... 126
8 -1.660PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  10  81RYFQFEGEGTLKITFLPNDRYLLENEKFR--LYYTAQGDEAHNFIVVVEDNFGNSYE............ 139
9 -1.510PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  18  3...APDGSF------PVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGT... 60
10 -1.380PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  18  148..DKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVL........................ 190
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.