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Query: gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKDDAVTAATGKGTANINTKHLPSTAPTRKSTPNLast
1 -5.150PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  11  88IPEEKRLKIDHLLNIKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDM......................................................... 154
2 -3.280PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  12  41IAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCY-TVSFLGEGDLCVTDLSRQVLRKYRGVTLFLEVEKAQHTLS............................................. 132
3 -3.230PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  13  2................................................................KKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTKITVKELPQVVKSTLSKD. 60
4 -3.180PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  9  1MLSDITVRYKLNNSIKDS----------RFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDILFEDHILIKAGFWKSITVGFKNTQFSLIPEALFEKDYLKE 114
5 -2.590PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  5  70YAKLASERLSELNARLASIKSKSERRKYIVQKYIEEQFLKKLTRTEGQILVKLIHRQTGVTT---QLIKNLRSGWRAFWYDTTAG------------------DIELKSEYNPVN......... 171
6 -2.350HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  18  11......................................RRTILFDNQCGFA---------------LGENSRAPNPFVTWQFNGQD...................................... 43
7 -2.220PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  8  88.EGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLT........................................... 167
8 -2.040PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  60..........KVLSDDGRIVNFTMIPGKDAIITGYGTYQQL---TDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGV.............................................. 124
9 -1.930HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  13  40.......SVDAEFSSRWVYPEEEIKKLVESLEDKDKVYIKILTYE............................................................................... 77
10 -1.840PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  5  95.SAAMYQAFMIGNISNKLVPAAIVAQSSIKAGSKRGDLAAVMAIGGAATMHLLS...................................................................... 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.