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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -3.410PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  11  3QTSASVLNLINPED------IESQTILKDAAATALYGSRGA---NGVVLITTKSGRRGKTH......................................................................................................................................... 54
2 -3.050HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  9  62ITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKD-TIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIY....................................................................................................... 155
3 -3.050PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  8  112VPAAIVAQSSIKAGSKRGDLAAVMAIGGAATMVGFLGTWLVSLVPVEVIEIMPSL--GAV.......................................................................................................................................... 185
4 -3.020HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  12  151.................SDSGRVLTITSGQETI----KSDVCPADSRLLLMAKDKDVQKVTWNAKCTDESGWAKVNAGTYVAQLSLKDHPKVKSDPVTFTVQ................................................................................................ 240
5 -2.800PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  9  100.TYAKVWQAIMFEDTQNGDYYNDLIIH----NTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFS----------YPQEKNSLFETYPGFSD 285
6 -2.460PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  14  13....EINKGAGNPLEFKGLKSQYLFIFAGGLVAVL-------------LVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGEHGLMKGKRHPRYLIHRRR............................................................................................ 104
7 -2.430PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  7  117...............GSSKTLKYLKTSGPMDFEAFSEDQLEIKISGSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGK....................................................................................................... 200
8 -2.220PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  11  49LPQVVKST----SKDYEGTIVKEAFVKENGKVYKIIVTAIKEDQSTEEITVLLNEKGEPVN......................................................................................................................................... 108
9 -2.170HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  10  27....SDERG---AGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALS-PCEAASRVARANGAEVTTCSVTGEDVVVEVSVE-VSRPAVSSARAGPVDDP..................................................................................... 142
10 -2.160PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  11  189VPYFDAGKGALE-GEFTPHYTRQDSIYMD-LHDELRAAVDQFDASQPTFGGADLFFNGSIQWK....................................................................................................................................... 250
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.