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Query: gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCRLast
1 -6.080sp|A6NFU0|F187A_HUMAN Ig-like V-type domain-containing protein FAM187A OS=Homo sapiens GN=FAM187A PE=3 SV=1  ali   11  13........GQEPFADEYYGHLHVFTTFWEWCDRC........................................................................................................ 40
2 -5.080sp|A8MPX8|PP2D1_HUMAN Protein phosphatase 2C-like domain-containing protein 1 OS=Homo sapiens GN=PP2D1 PE=2 SV=2  ali   8..............................CSICKHEIDLTGIFLHKKQHVALATLGFQ-RKKPQPSVIAVQRQFMISKLLSSFMFTEKTLQSINNAFELLWKKQIPAYYKIFDNIDRSVIYSQKICHLL........ 109
3 -5.000sp|Q9UGI8|TES_HUMAN Testin OS=Homo sapiens GN=TES PE=1 SV=1  ali   14  13.......................LHFWRKICRNCKCGQEEHDVLLSNEEDRKVGKLFEDTKKSDGIPMYKRNV................................................................. 70
4 -4.990sp|Q8N1Q8|THEM5_HUMAN Thioesterase superfamily member 5 OS=Homo sapiens GN=THEM5 PE=2 SV=2  ali   54DYALPNASWCSDMLSLYQ-EFLEKTKSSGW-----IKLPSFKSNRDHIRGLKLPSGLAVSSDKGDCRIFIQVEGQGFEYV.......................................................... 130
5 -4.950sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein 1 OS=Homo sapiens GN=LMCD1 PE=1 SV=1  ali   12  15.......................PHSWRKICKSCKSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRN.................................................................. 72
6 -4.820sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=3  ali   157..............DYLVLSPFALPYWER-------------MLEPYGSQRDIAYVVLCPENENGAKSFFRDLTAIYESC----GQHRPVSRLLTDGIMRVGSTASKKLSEKLVAEWFSQAADGEAFSKLKLYAQVCR 271
7 -4.570sp|P55107|BMP3B_HUMAN Bone morphogenetic protein 3B OS=Homo sapiens GN=GDF10 PE=1 SV=1  ali   14  5HLLFRSLSQNTATQGLLRGAMALAP--GLW------QAKDISPIVKAARRDGELLLSAQLDSEERILVYANDLAISEP............................................................ 90
8 -4.540sp|O14939|PLD2_HUMAN Phospholipase D2 OS=Homo sapiens GN=PLD2 PE=1 SV=2  ali   11........................DFFQLWQDMAESNANIYEQIFRCLPSN-------ATRSLRTLREYVAVE----PLATVSPPLARSELTQVQGHLVHFPLKFLEDES............................ 85
9 -4.490sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1  ali   14  60.................AGHLQLHNAAVDWLSRCKKYLSQKNVVEKLNANVMHGKHVMILECTCHIMSYLADVT................................................................ 116
10 -4.460sp|Q8WTS1|ABHD5_HUMAN 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 OS=Homo sapiens GN=ABHD5 PE=1 SV=1  ali   1...MAAEEEEVDSADTGERSGWLTGWLPTWCPTSISHLKEAEEKMLKCVPCTYKKEPVRISNGNKIWTL..................................................................... 66

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.