current user: public

If you have questions about the server, please let us know.

Query: gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .
# Score Template Links and tools%idFirst MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTILKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVILPLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLIADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLALast
1 -7.140sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3  ali   16  83.....................KFALKDVELDFNNVAADSSLDSVP........................................................................................................................................................................... 106
2 -6.020sp|Q8IWB6|TEX14_HUMAN Testis-expressed protein 14 OS=Homo sapiens GN=TEX14 PE=2 SV=2  ali   14  7................................................................................LKKIDSPQRLVYSPSWCGGLVQGNPNGSPNRLKAGVISAQNIYSFGFGKAMPWFQFYLTGATQMAYLGSLPVIGEKEVIQADEPTFSF................................................ 96
3 -5.710sp|Q12815|TROAP_HUMAN Tastin OS=Homo sapiens GN=TROAP PE=1 SV=3  ali   20  1.............................................................................................................................................KIQRIGILQQLLRQEVEGLVGGQCVPLNGGSSLDMVELQPLLTEISRTLNATEHNSGT................. 58
4 -5.690sp|A6QL63|BTBDB_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein BTBD11 OS=Homo sapiens GN=BTBD11 PE=2 SV=3  ali   12  3.........................................................................................................................IRSIGVPWTLHTWLESLRAFQQHRRPLIQCLLKEFKTIQEEEYTEELVTQGLPLMFEILKASKNEVISQQLCV...................... 76
5 -5.270sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1  ali   12  1..........................................................................................................................RALGVPWKLHIWIESLTSFSQSRYSVVQSLLRDFSSIREEEYNEELVTEGLQLMFDILKTSKNDSVIQQLAT...................... 73
6 -5.090sp|Q8N3J3|CQ053_HUMAN Uncharacterized protein C17orf53 OS=Homo sapiens GN=C17orf53 PE=2 SV=1  ali   38.............................................................................................................................................PRNKVPNMAVMIKDASVVFKD-PTGEMQGTVHRLLLETCQNELKPG-SVLLLKQIGVFSPSLRNHYLNVTPNNLV 117
7 -4.640tr|Q86X87|Q86X87_HUMAN HCG39249, isoform CRA_d OS=Homo sapiens GN=UBOX5 PE=2 SV=1  ali   1.....................................................................................EAFTLVGKVLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQWNKGALSLSHVAHLRICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSILLV................................. 100
8 -4.640sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1  ali   1.....................................................................................EAFTLVGKVLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQWNKGALSLSHVAHLRICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSILLV................................. 100
9 -4.620tr|E9PRE3|E9PRE3_HUMAN Uncharacterized protein OS=Homo sapiens GN=LMO7 PE=4 SV=1  ali   2.......................................................................................................................................TEADGTFSSQFLLLQALQTYSDDILSSETHTKIDPTSGPRLIT...................................... 44
10 -4.260sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3 PE=1 SV=2  ali   15  8.......................................................................................................................ELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTAARQKIGLSDARLKLGVKDAREKLLQKDARFRI........................ 87

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.