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Query: gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MVEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKDDAVTAATGKGTANINTKHLPSTAPTRKSTPNLast
1 -8.760sp|Q86X10|RLGPB_HUMAN Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1  ali   13  2..DAAEATLTCIMQLLGAFPSPSGPASPCSLPTINKHSFRYFVLDNSVILAMLEQPLGNEQNDFFSVTVLVRGMSGRLAWAQQ......................................... 95
2 -6.810sp|Q2PPJ7|RGPA2_HUMAN Ral GTPase-activating protein subunit alpha-2 OS=Homo sapiens GN=RALGAPA2 PE=1 SV=2  ali   6  3...TARMVMAHLVNHLGHYPLSGGPAILHSFEVFRSPNLQLFVFNDSTLISYLQTPTEGPVGGSSDVRVIVRDISGKYSWDGK......................................... 104
3 -6.740sp|Q6GYQ0|RGPA1_HUMAN Ral GTPase-activating protein subunit alpha-1 OS=Homo sapiens GN=RALGAPA1 PE=1 SV=1  ali   8  2..IAARTVITHLVNHLGHYPMSGGPAMLTSPELFESPNIQFFVLNNTTLVSCI-GLSAGLASANSNVRIIVRDLSGKYSWDSA......................................... 109
4 -5.610sp|Q6IWH7|ANO7_HUMAN Anoctamin-7 OS=Homo sapiens GN=ANO7 PE=1 SV=2  ali   6  108FTSTKRHQILFEILAKTPYGHEKKNLLGIHQLLAEGVLSAAFPLHDGPFKTPPEGPQAPRLNQRQVLF----------HWA........................................... 179
5 -5.320sp|Q9H3C7|GGNB2_HUMAN Gametogenetin-binding protein 2 OS=Homo sapiens GN=GGNBP2 PE=1 SV=1  ali   6  1......................................................................PLGGCWMDVWELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNK..... 49
6 -5.290sp|Q9BYT9|ANO3_HUMAN Anoctamin-3 OS=Homo sapiens GN=ANO3 PE=2 SV=2  ali   12  145FSNATRSRIVYHMLERTKYENGISKVGIRK---NNGSYIAAFPPHEGAYKSSQPIKTHGPQNNRHLLY----------RWA........................................... 215
7 -5.140sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3  ali   20  10..ENTKEGLAELYEYKKKYSDADIEPFLKNSSQFFQSYVER................................................................................... 48
8 -5.060sp|Q86VR8|FJX1_HUMAN Four-jointed box protein 1 OS=Homo sapiens GN=FJX1 PE=2 SV=1  ali   13  25.LEAARGARMVALERGGCGRSSNRLARFADGTRACVRYGINPEQIQGEALSYYLARLLGLQRHVPPLALA-RVEARGAQWAQVQEELRAAHWTEGSVVSLTRWLPNLTDVVVPAPWRSED.... 142
9 -5.020tr|B7ZBL6|B7ZBL6_HUMAN Family with sequence similarity 183, member A OS=Homo sapiens GN=FAM183A PE=4 SV=1  ali   12  1....MKRRVKSGTHLM---CSLEVHT-------VTRKPMSWHDNLEEPADARFLNLIHHAAQGPRKKYPETQTENQEVGW............................................ 66
10 -4.960sp|Q8N5W9|F101B_HUMAN Protein FAM101B OS=Homo sapiens GN=FAM101B PE=1 SV=1  ali   6  34..DSERHFIDDVQLPLGLAVASCSQTVTCVPNGTWRNYKAEVRFEP----------RHRPTRFLSTTIVYPKYPKAVYTTTLDYNCRKTLRRFLSSVELEAAELPGS--DDLSDEC........ 135
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.