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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -6.590sp|Q8TB96|TIP_HUMAN T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1  ali   9  42..SQSAHLALQLPYNVLGNFLDHLYVGRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWS....................................................................................................................................... 109
2 -5.630sp|Q8TB73|NDNF_HUMAN Protein NDNF OS=Homo sapiens GN=NDNF PE=2 SV=2  ali   9  3LPTRDEELFQMQIRDKAFFHDSSVIPDGAEISSYLFRDTPKREEDNTPLSVTVTPCDAPLEWK....................................................................................................................................... 70
3 -5.500sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2  ali   5  2........GLDATGTFFSRYGASLKLLDFSIMTFLWNEKYGHKLDSYFSEPASLKEARCLIWLLEEH................................................................................................................................... 67
4 -5.360sp|Q8ND61|CC020_HUMAN Uncharacterized protein C3orf20 OS=Homo sapiens GN=C3orf20 PE=1 SV=2  ali   9  17.PSGNVAVCQIPTCCRGRTITCLFNDIPGFSLLALFNTEGQGCVTSCPYVLILDEEGGTTKWSWTSRTETLLSLEYKVNEEMKLKVLGQDSITVTFT..................................................................................................... 126
5 -5.310sp|Q9BU19|ZN692_HUMAN Zinc finger protein 692 OS=Homo sapiens GN=ZNF692 PE=1 SV=1  ali   14  14....KERLGFSLHSQLAKFLLDRYTSSGCVLCAGPEPLPPKGHAHSRECSLVPGLRDGGLVWECSAG................................................................................................................................... 89
6 -5.130sp|Q96T75|DSCR8_HUMAN Down syndrome critical region protein 8 OS=Homo sapiens GN=DSCR8 PE=2 SV=2  ali   11  26..............................................LLLFLSPRLESGSITDHCSLHLPVQEILMSQPPEQLGLQTNLGNQESIQFMP.................................................................................................... 97
7 -5.080sp|Q02413|DSG1_HUMAN Desmoglein-1 OS=Homo sapiens GN=DSG1 PE=1 SV=2  ali   13  1LLSDNVHFGPAG----IGLLIMGFLVLGLVPFLMICCDCGGAPRSAAGFEPVPECSDGAISWAVEGPQPEPRDITT.......................................................................................................................... 73
8 -4.810sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=3  ali   18  33IIVDNPAFTIRAGESVRPKKINNITVS-----FEGNPSGSKTPITTKLTVSCPPGEGSEVKWV....................................................................................................................................... 92
9 -4.760sp|Q8IUK5|PXDC1_HUMAN Plexin domain-containing protein 1 OS=Homo sapiens GN=PLXDC1 PE=1 SV=2  ali   7  1...QASRVVLSFDFPFYGHPLRQITIATGGYVAPLMANFNPGYSDNSTVVYFDNGTVFVVQW----DHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPMSVPEISSSQHPVKT................................................................................... 124
10 -4.740sp|Q86VR8|FJX1_HUMAN Four-jointed box protein 1 OS=Homo sapiens GN=FJX1 PE=2 SV=1  ali   15  45...SNRLARFADGTRACVRYGINPEQIQGEALSYYLARLLGLQRHVPPLALA-RVEARGAQWAQVQEELRAAHWTEGSVVSLTR-----PNLTDVVVPAPWRSEDG............................................................................................ 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.