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Query: gi|15675973|ref|NP_273099.1|(removed signalp:1-19) putative membrane-bound lytic murein transglycosylase A (NMB0033) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ACQSKSIQTFPQPDTSVINGPDRPVGIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIYGIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKSYMRQNPQRLAEVLGQNPSYIFFRELAGSSNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRPLast
1 -106.0002g5d_A mol:protein length:422 GNA33  ali model follow..  95  1GSQSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGGTHTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAGAIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP 422
2 -95.2002pnw_A mol:protein length:380 Membrane-bound lytic murein transglycosylase  ali model follow..  31  2..................................SLNTPFSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKELVSLLELAERGVNSPEQARQFFETNSVPFRISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDI----------------------------------DNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREADVGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR. 371
3 -92.6003czb_A mol:protein length:351 Putative transglycosylase  ali model follow..  31  2....................................SLSAMPAALSFAGLAGWAEEDHLAALNAFRAGCGVSKDPAAARVCGLAKATKDLDVSGAKAFIEANFRVEAV--DGGGDGLLTAYFAPQYEARMSRNAEFSAPLRGLPADLVVL----------------------------------DLGPFEPALVGKKITGHVEGSTFVPYPDRAEIEAT----PSDKPLAWMRPEELFFLQIQGSGVLVLPDGRRVRAVFAGTNGKPFVGIAIAMRDKGLLPDNNTSADAIRTWLAEHGPEADAIMRLNPRYVFFRTVP-DDGKEPAGAAGVALPPGRAIAVDPGYHAYGGFYWLDAAAPKAFPVYRRAVTALDTGGAIKGEVRADLYMGSGAVAGVEAGRVRHTLRLYRLTPNPEG..... 345
4 -85.8002gae_A mol:protein length:346 Membrane-bound lytic murein transglycosylase A  ali model follow..  28  1GSSSKPTDRGQQYKDGKFTQPFS------------------LVNQPDAVGAPINAGDFAEQINHIRNSSPRLYG--NQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRG------------------------------------------------------------RLPSRAEIYAGALSDKY-ILAYSNSLMDNFIMDVQGSGYIDFGDGSPLFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSEEVRELLEQNPSFVFFKPQS---FAPVKGASAVPLVGRASVASDRSIIPPGTTLLAEVPLLDNGQYELRLMVALDVGGAIKGQ-HFDIYQGIGPEAGHRAGWYNHYGRVWVLKTAPGAGNVF. 344
5 -85.7002pi8_A mol:protein length:345 Membrane-bound lytic murein transglycosylase A  ali model follow..  27  1.MSSKPTDRGQQYKDGKF------------------TQPFSLVNQPDAVGAPINAGDFAEQINHIRNSSPRLYG--NQSNVYNAVQEWLRAGGDTRNMRQFGIDAWQMGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRG------------------------------------------------------------RLSSRAEIYAGALSDKY-ILAYSNSLMDNFIMDVQGSGYIDFGDGSPLFFSYAGKNGHAYRSIGKVLIDRGEVKKEDMSMQAIRHWGETHSAEVRELLEQNPSFVFFKPQS---FAPVKGASAVPLVGRASVASDRSIIPPGTTLIAEVPLLDNGQYELRLMVALDVGGAIKGQHF-AIYQGIGPEAGHRAGWYNHYGRVWVLKTAPGAGNVF. 343
6 -15.6004wjt_A mol:protein length:167 Uncharacterized protein YuiC  ali model follow..  25  52..............................................................................................................................................................................................................................................................................................................................NPGDPLYGLTYSGVKVKLYSTVAADPSVFPIGTILFIPN----------GLGVVADTGSAIKG-NRLDLYFETVKDVYNEWG--KKTLDVYVI........... 134
7 -7.3603umf_A mol:protein length:217 Adenylate kinase  ali model follow..  14  21.......................................................................................................................................................................................................................................AKAKVIFVLGGPGSGKNHLSSGDLLRAEV--QSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFL------------------------GYPRELDQGIKFEKEVCPCLCVINFDVS---EEVMRKRLL-VDDNEETIV--KRFRTF----ELTKPVIEHYKQQNKVITI........... 188
8 -7.2405xz2_A mol:protein length:196 Adenylate kinase isoenzyme 1  ali model follow..  16  7......................................................................................................................................................................................................................................IKNAKIVFVVGGPGSGKTHLSSGDLLRAEV--ASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLID----------------------GYPREVKQGEEFEKKIGAPALLLYIDAKGETMVKRLMK---ADDNEETIK--KRLDLY----KATEPVIAFYEQRGIVRKI........... 175
9 -7.1405ycd_A mol:protein length:193 Adenylayte kinase  ali model follow..  17  5......................................................................................................................................................................................................................................IKDAKIIFVVGGPGSGKTHLSSGDLLRAEV--ASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGFLID----------------------GYPREVKQGEEFEKKIGKPCLLLYVDAK---AETMVKRLL-SDDNEETIK--KRLDLY----KATEPVIAFYEGRGIVKKV........... 173
10 -7.1405x6k_A mol:protein length:195 adenylate kinase isoenzyme 1  ali model follow..  17  7......................................................................................................................................................................................................................................IKDAKIIFVVGGPGSGKTHLSSGDLLRAEV--SSGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLID----------------------GYPREVKQGEEFEKKIGKPCLLLYVDAK---GETMVKRLM-ADDNEETIK--KRLDLY----KATEPVIAFYEGRGIVRKV........... 175
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.