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Query: gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst TYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNRLast
1 -7.2302yay_A mol:protein length:271 DUTPASE  ali model follow..  20  178YYIAKHTLNCIRQLS-------YKDGSYVKDKYVQAWNSIMANVYEAFQIKESDRKDAERWFALAKENR 266
2 -6.5806f2d_F mol:protein length:303 Flagellar biosynthetic protein FliR  ali model follow..  19  257EMPINNNPENLYFQ---------QFGSWSHPQ--------------EKGGGSGGGSGGGSWSHPQFEK. 303
3 -6.3403ehs_A mol:protein length:476 fusion protein of CRFR1 extracellular domain and MBP  ali model follow..  19  427.............RYNTTNNGYLANGSWAARVNYSECQEI-----------NEEKKSKVHYH....... 468
4 -6.2603lp3_A mol:protein length:138 p15  ali model follow..  20  1......GSYQLEKEPIVGAETFYVDGAANRE...................................... 25
5 -6.2203uaj_B mol:protein length:433 envelope protein  ali model follow..  13  381......GVGNSALTLHWFRKGPFEDDDDKAGWSHPQF---------EKGGGSGGGSGGGSWSHPQFEK. 433
6 -6.0805n09_A mol:protein length:430 Envelope Glycoprotein E  ali model follow..  12  359..TEKDSPVNIEAEPPFGDSYWFKKGLVPRGSS---SHPQ-------EKGGSGGGSGGSAWSHPQFEK. 430
7 -6.0606apd_A mol:protein length:573 Fusion glycoprotein F0,Envelope glycoprotein  ali model follow..  18  529AYVRKDGEWVLLSTFLGSMEVLFQGP-------------------------------GSAWSHPQFEK. 565
8 -6.0206egt_A mol:protein length:531 Glycoprotein  ali model follow..  19  496.......................GGGSGGGSWSHPQF---------EKGGGSGGGSGGGSWSHPQFEK. 531
9 -5.9404dk4_A mol:protein length:290 Deoxyuridine triphosphatase  ali model follow..  20  207YYVAKHTLNGIRQMK-------YKDGTYVKGNYKTKWDDIMHRVYDAFGTPKEERLNIGHWLK...... 289
10 -5.8906bar_A mol:protein length:359 Rod shape determining protein RodA  ali model follow..  18  214..PLGQGFQVIQSTIAIGSGGLFGKGYGQGTQAQLGFIPFRHSVWAEEWG................... 266
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.