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Query: gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTGFNDAAGVASSSDIKGKYVEKVEVKNGVVTATMLSSGVNKEIKGKKLSLWAKRQNGSVKWFCGQPVTRNDTATATATDVAAANGKTDDKINTKHLPSTCRDDSSTGCIETPRADFKHFQKISRYRVLPESRQMAEKLRHSRKSGNLVRWFQLFRINFETLIPSFPRKWESRTQNLKKPFYPISFRTDRPGFPPARELast
1 -43.6005jw8_A mol:protein length:137 Major pilin PilE  ali model follow..  72  33WPGDNSSAGVATSADIKGKYVQSVTVANGVITAQMASSNVNNEIKSKKLSLWAKRQNGSVKWFCGQPVTRTTATATDVAA---ANGKTDDKINTKHLPSTCRDDSSAS.......................................................................................... 137
2 -42.4004v1j_A mol:protein length:142 FIMBRIAL PROTEIN  ali model follow..  70  36WPGNNTSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKAAND-DVTAAAAANGKKIDTKHLPSTCRDASDAS.......................................................................................... 142
3 -34.7003jyz_A mol:protein length:150 Type IV pilin structural subunit  ali model follow..  17  35DLTRATTTQQSNNLGASSKYVTSVLMDAGNITITYVADQVGLPTAGNTLILSPYINDGTIDWACTSAS-------NATATAQGFTGMAAGSVPQEFAPAQCR................................................................................................ 150
4 -29.6001qve_A mol:protein length:126 Fimbrial protein  ali model follow..  30  33CPANTAATAIEKDTDINGKYVAKVTTGGTAIVATMKASDVATPLRGKTLTLTLGNAKGSYTWACT------------------------SNADNKYLPKTCQTATTTT.......................................................................................... 125
5 -28.6001hpw_A mol:protein length:129 FIMBRIAL PROTEIN  ali model follow..  30  36CPANTAATAIEKDTDINGKYVAKVTTGGCTIVATMKASDVATPLRGKTLTLTLGNAKGSYTWACT------------------------SNADNKYLPKTCQTATTTT.......................................................................................... 128
6 -28.0001ay2_A mol:protein length:158 TYPE 4 PILIN  ali model follow..  71  57WPENNTSAGVASPSDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRT-------DDDTVADAKDGKEIDTKHLPSTCRDNFDA........................................................................................... 157
7 -28.0005kua_A mol:protein length:161 pilin  ali model follow..  76  57WPGDNSSAGVATSADIKGKYVQSVTVANGVITAQMASSNVNNEIKSKKLSLWAKRQNGSVKWFCGQPVTRTTATAT---DVAAANGKTDDKINTKHLPSTCRDDSSAS.......................................................................................... 161
8 -26.1006BBK Entity 1(prereleased)  ali follow..  17  43..DTQYDIGFTESTLLDGSGKSQIQVDGTVELVATLGKSSGSAIKGAVITVSRKNDGV---WNCKITK-------------------TPTAWKPNYAPANCPKS.............................................................................................. 126
9 -24.6002hi2_A mol:protein length:158 Fimbrial protein  ali model follow..  69  57WPENNTSAGVSSPTDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKKLSLWARRENGSVKWFCGQPVTRT-------DDDTVADAKDGKEIDTKHLPSTCRDNFDA........................................................................................... 157
10 -23.6001dzo_A mol:protein length:123 TYPE IV PILIN  ali model follow..  14  36VKSGTGTEDATKKEVPLGVAADANKLGTADITLTFTMGGAGPKNKGKIITLTRTAADGL--WKCT------------------------SDQDEQFIPKGCSR............................................................................................... 123
11 -22.9002py0_A mol:protein length:120 Fimbrial protein  ali model follow..  14  34VKSGTGTEDATKKEVPLGVAADANKLGTADITLTFTMGGAGPKNKGKIITLTRTAADGL--WKCK------------------------SDQDPQFIPKGCS................................................................................................ 120
12 -11.8001oqw_A mol:protein length:144 Fimbrial protein  ali model follow..  23  94..........................GTADITLTFTMGGAGPKNKGKIITLTRTAADGL--WKCT------------------------SDQDEQFIPKGCSR............................................................................................... 144
13 -11.6003soj_A mol:protein length:115 PilE  ali model follow..  17  29....NNNLDISQQTYDTPTGVTVTGSTSGATIDINLSQTSPQHFTNDNIRLSGVVVSGSTQWTCSHNV-------------------NASTLTASNVPHTCSSTFSA........................................................................................... 115
14 -9.1004xa2_A mol:protein length:498 Maltose-binding periplasmic protein,MBP-PilA: c  ali model follow..  17  410...DVEALGLQKSTNACSTITTSIGTNGASNITCTLKG--TSQINSKKIEWIDNATNGT-AWRC------------------------KTDVAENLRPKSCGASGS............................................................................................ 490
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.