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Query: gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCRLast
1 -55.600PF00578.21; B8CZ50_HALOH/40-156; AhpC/TSA family  ali follow..  19  7DFTLTKLSGEEVSLSDFRGKKVFLNFWASWCPPCQAEMPYIQKLYTEHGD-DVAILGVDIEDKGTVAEFMLVNGYTFPVALDKKREVAAKYL-----VRGIPTTYIIDEDGIVTHR...................... 117
2 -39.300PF13905.6; C7PLC9_CHIPD/371-464; Thioredoxin-like  ali follow..  12  1..................SKVVILTMLNDLD-ECRNSFSAMKEIKNRFKDDPAIFLNIISSPLVKTYSKADKMAYDFILHPRSKTEEGALLRNYN--VLQYPTVYVTDGGSRI......................... 94
3 -34.000PF09695.10; Q9KP29_VIBCH/23-182; Bacterial protein of unknown function (YtfJ_HI0045)  ali follow..  11  19VLQDNNINYQKWRSADLLGKVRVIQAIAGRSSSKEMNAPLMAAITAAFPAESYQTTTIINQDDAIVKSSAQDSKKEFPMVLDEFGLVAQAWQL----QAESSAIIVQDKQGNVLFVKEGALNEADIQTVLGLIQQN.. 160
4 -33.100PF04592.14; G1LAZ4_AILME/4-242; Selenoprotein P, N terminal region  ali follow..  11AWSIRDQS----PMLNSGGSVTVVALLQASSKYLLGRIYRLEDLRVKLEKEGISYVVVNHQGLPSYMHLKNKVSEHIPVYQQEENQT-DVWTLLN---GKKDDFLVYDRCGRLVHHLGLPLTFPYVEEAIKIAYCEEK 149
5 -32.800PF00837.17; IOD2_HUMAN/4-262; Iodothyronine deiodinase  ali follow..  11  97NGTQEKIEGATCHLLDFASERPLVVNFGSATPPFTSQLPAFRKLVEEFSSV-ADFLLVYIDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYG----VAFERVCIVQRQKIAYLGKGPFNLQEVRHWLEKNF.... 258
6 -29.600PF13728.6; Q5NX60_AROAE/38-262; F plasmid transfer operon protein  ali follow..  15  113TVLATNKEQKDEVTKHLASKGGIFMFFDSSCSHCEKQFPVIGMLKERY---GFETRFVSVDGKPL----------GMDNWIPDAGQFQSL------NLKLTPTVVYAVPPNNFYVVAQGAMSASGLVDRL........ 224
7 -24.600PF08534.10; Q7USC5_RHOBA/22-164; Redoxin  ali follow..  8DFSLHYAHEKELKLADLKGKPSMISIVPS-TPTCATQTKKFNEQLGEL-GDKINAVTVSRDLPFAQARFCGAENVQMRTASDQTHAFGEDYGVEIEELKLL-AVIVLDADGKVVYKQI.................... 129
8 -22.600PF05988.12; B2UBD6_RALPJ/2-252; Bacterial protein of unknown function (DUF899 topsan)  ali follow..  48SYRFETENGSATLADLFGGRSQLLVYHFMFCPSCSMIADGFDGFVTHLANHDVTLLAVSRGPLAKLIEYRERMGWSFPWASSVGSDFNYDFNVSISEEQQRAGSADYNYVR........................... 165
9 -22.300PF05176.14; H2ANS8_KAZAF/22-259; ATP10 protein  ali follow..  95HIVGKSLANKKLSIEELKGKLSVVRMFSNSAGNDLQNTKELQFINIHWVENVLKSAIVKLSK-WNIKNNVPKESHKDYFICSRSQLPFTIRDELKINNMYTGYLFLVDKDLKIRWLGCGGATTLDQEILANSIEG... 237
10 -18.600PF02966.16; Q0URV1_PHANO/5-137; Mitosis protein DIM1  ali follow..  4..HLRSGWHVDQAILSEEDRLVVIRFGRDSDPNCMSQDEILYKIADRVKNF-ATIYLCDNVEVPDFNAMYE--------------------------LYDPMTIMFF-FRNKHMMCDFGTGNNNKLNWVLED...... 105
11 -18.600PF00255.19; GPX3_YEAST/4-111; Glutathione peroxidase  ali follow..  21  3KLAPVDKKGQPFPFDQLKGKVVLIVNVASKCG--TPQYKELEALYKRYKDEGFTIIGFPCNQDEEIAQFCQNYGVTFPIMKKIDVNGGNEDPVY............................................ 104
12 -16.600PF00085.20; PDIA4_MOUSE/56-159; Thioredoxin  ali follow..  15  2...VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI.......................................................... 78
13 -15.800PF06110.11; Q9VMQ9_DROME/6-124; Eukaryotic protein of unknown function (DUF953 topsan)  ali follow..  10  1..NVKGYDEFTKKMEELGDEPVHVLFSGGWCPYCVKAEPVIHDALKKAPGN-SHFVHVDVGERAYWKDLNCPFRKDPNT-----------------HLIFLPTLLRWKRPQRLDGERC--SNQDLVEMMFED...... 119
14 -15.300PF14595.6; Q5WJI4_BACSK/10-138; Thioredoxin  ali follow..  11  29.......GDAVQGMERLQGKGMAVVLTADWCGDAMVNVPIFLKL-------------------------AQTALMDVRFLIRDENLELMDQYLTNGRARSIPIIVFFDREGKEAGKWG------PRAGEIEALVTEWK 129
15 -15.100PF02630.14; A0A0A5I2U2_9VIBR/37-171; SCO1/SenC  ali follow..  10  1.VVLFGENNQEVNIFDTDSRIRVVYFGFTRCPDCPTSLAMLAGALNQVDEAKFRPMFISLDAAADSYKYAQYFHPMIEGLSAPLDVTTPLAHRYGVIFRKTEYFYFLKPDGTL......................... 135
16 -13.300PF07449.11; Q8ZP25_SALTY/10-116; Hydrogenase-1 expression protein HyaE  ali follow..  11  22.............IKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGD----------------------------NVRRFP-ATLVFTDGKLRGALSGIHPWAEL............ 107
17 -12.100PF07912.13; WBL_DROME/22-147; ERp29, N-terminal domain  ali follow..  11  6...CVDLDELSFEKTVERFPYSVVKFDIAYPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDY-----------------GELENKALGDRYKVDDKNFPSIFLFNADEYVQLPSHVDVTLDNLKAFVSA...... 117
18 -12.000PF11009.8; C0ZHM1_BREBN/4-102; Protein of unknown function (DUF2847 topsan)  ali follow..  15.................KNGKKLLFKHSTICPISTSAYEEFQTYLQDNQ---VESAVILVREDRPVSNAVADR----------------------SIKHESPQIFLLEDGEVKWHTSHWKITKDAI............ 99
19 -10.400PF13899.6; B6JZI1_SCHJY/161-244; Thioredoxin-like  ali follow..  14  7.........SARALAADKQKWLLVNLQTSSSFECQ-------------------VLNRDLWKNDSVKAVIRAHFIFLQYLDDEEPGLEFKRY----PVESTPHIAILDP............................. 84
20 -10.400PF02114.16; PHLP_RAT/35-299; Phosducin  ali follow..  142..............KEQKSTLIMVHIYEDGVPGTEAMNGCMICLAAEYPT--VKFCRVRSSVIGASSRF---------------------------TRNALP-ALLIYKAGELIGNFVRDFFAVDLEAFLQE...... 236
21 -9.800PF13911.6; Q8YTT5_NOSS1/61-247; AhpC/TSA antioxidant enzyme  ali follow..  2........................................LQREKEQIAARGIRICAIGIGDRNSGLKFCEYTGFPQEWLFVDAKA--EIHRILG........................................... 54
22 -9.500PF04756.13; S9VSN2_SCHCR/32-316; OST3 / OST6 family, transporter family  ali follow..  11  24.............VTGKQDHTTVALFSVDACEICRLIEPEFKALAYSYKDSGIRFVYADFGKNRNLFEQFA--------------------------IESVPNFWIFKPNTIVPISLSSGVSAEKLAALVERETG... 130
23 -9.120PF05768.14; Q82SJ4_NITEU/9-85; Glutaredoxin-like domain (DUF836 topsan)  ali follow..  12  2......................LVVYGREGCHLCEEMIASLRVLQKKS---WFELEVINIDGNE---HLTRLYNDRVPVLFAVNED.................................................... 59

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 9 1 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Alonso A, Sasin J, Bottini N, Friedberg I, Friedberg I, Osterman A, Godzik A., Hunter T, Dixon J, Mustelin T. Protein tyrosine phosphatases in the human genome. Cell. 2004 Jun 11;117(6):699-711. Review.