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Query: gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTILKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVILPLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPGLLIADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLALast
1 -45.000PF00005.27; YTFR_ECOLI/25-174; ABC transporter  ali follow..  28  1.................LDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAISPKNTAH--AQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRLRRKEMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTA.................................................. 150
2 -33.200PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class  ali follow..  12  258.............ECPNQGKISGMGIPKGVTLIVGGGYHGKSTLLKAIEGGVYN---HVPDDGREF-------VVTDPAAIKIRAEDGRSVAGVDISPFI-------NQLPQNRSTTQFTTENASGSTSQAANIMEALEAGLGNSNLEETTTTATTPVFLVDEDTAATNFMIRDRRMQELQLYTDYQVSTILVMGGSGDYFEIADKIIAMENFQA. 458
3 -18.000PF10443.9; C8VEZ9_EMENI/373-791; RNA12 protein  ali follow..  10  2...........HNDIEQLNSW-LTESAETFIVIHGPRGSGKRELVLDR--TLKDNKYKLIIDCKQIQDAKGDTIARAASQVGYRPVFSWMNSISSFIDLAAQGMITKAGFSETLDAQLSNIWQNTAVATLEHRKKTDPDAQLSDEEYLEAHPEVRPVVVIDNHNNPEATSVVYDKITEWAAGLATGNAHVIFLTTDVSFAKPLSKALPNTVFRTIS 213
4 -17.600PF02456.15; PKG1_ADEG1/61-425; Adenovirus IVa2 protein  ali follow..  16  59VKAQEQMDSRYLQHG-QLPSINMGK-QPIIGVIYGPTGSGKSHLLRALISMLDPIPETVIFITPEKNMIPPIE--QTSWNLQLVEANFDCREDGTIAPKTS------TFRPEFMEMTYEEATA-----------PEHLNIDHPDNI-YVKVSKRGPVAIIMDECMDKLCSGS--SVSVLFHALPSKAFYIFVVLHNMAPRTAIGN........... 250
5 -15.300PF13401.6; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  10  2.........................SQESILLVCGPTGAGKTTLAKFMVENAHSQSHAEMELNAGVIPA----------YVQAPASGETKFSWRLFYQRI-----LNQLGDDLDSPKVAYGVDSLSGRLVRPRGTSGNSLAALRTAVERGLRARQVQFMVIDEAAHIFRDTQREVQLDTLKSLNECGTQIVLV....................... 160
6 -14.200PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain  ali follow..  14  2.....KISKLKLKNFRSYRSVEISFE--NLTAFIGRNDIGKSTILEALDIFFNEGKGVVKLEANDLNTEAKGQDEQKEDGKNIWEKIKEFLPQYSLFQSDRKNSDNDSEVQDPLKEATKEIISSSNLETQFNQIATEVTKGVRRLILLNFFRANRTLIYAIEEPETSQHNEHQKILIDALKNLANNGRQIMLTTHSGNIV................ 378
7 -12.500PF13304.6; A0ZCH2_NODSP/23-347; AAA domain, putative AbiEii toxin, Type IV TA system  ali follow..  10  187.................................LGSTGLGLQAVVK------------------YIKEKEERTFTRFTALMRRFENNFQGVRYNEKISKLVWEFDFGRKTTVEEFT------------------PDSVSDGFMKAAAISLLASRPPSLILLEEIENGVNPGNIQELMHWIWQMTSPTSQFIITSHSPSVLR............... 325
8 -12.100PF11398.8; Q6LIW4_PHOPR/1-374; Protein of unknown function (DUF2813 topsan)  ali follow..  12  3......LERIEVSGFRGIKRLSLSFN--QLSVLIGENAWGKSSLLDALSIALAVNTEFYTFKFSDIRDARRLRDDTLEQAIQHSDEQAKKLRIERRLDNTRLITQPGHVNSGELKSSVNALRTLVD-ENPLEQLTQPQMSKQSRLVLMGLLNAISRPIMILEDPEGRLHPTVLHQAWTFVDSMPMQ---KILTTNSPDLLSIVPLGSIKK...... 337
9 -11.500PF13558.6; B3PE30_CELJU/966-1055; Putative exonuclease SbcCD, C subunit  ali follow..  15  15.......................................................................................................................EIFTQNKSIGLLSKRLGPGSGGEHRTVIFGAALAAGGGIMLLDEAFEKMDAQNVRATADYLNA.................................. 90
10 -10.200PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  15  1........................FKKKQLIVLDPHPGAGKTRKV----------------------------PEFIRQAVERRLWTLALAPTRVVAAEMA---------EALNGLPVRYLTPAVIQQHTGKEIVDLMCHATFTMRLLSGGRVPNYNMFIMDE---HFTDPSSIAARGYISTKVDMGEASAVFM...................... 132
11 -9.910PF04310.12; MUKB_ECOLI/2-227; MukB N-terminal  ali follow..  13  1.IERGKFRSLTLINWNGFFARTFDLD-ELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSR.............................................................................................................................................. 72
12 -9.840PF18751.1; S5Y5G5_9CAUD/1-187; P-loop Nucleotide Kinase3  ali follow..  36  2..........................TARLIYLVGQPGSGKSTLMSAL........................................................................................................................................................................ 23
13 -9.670PF06745.13; O29463_ARCFU/20-274; KaiC  ali follow..  7  5.TKLDELFYKVEKEGDRYVRK---IPHLAVMNITGVPDTGKSLLEQFAITQAGSGYRVLYVTVESPANFLYTAMKERSEAMGVDFTKVE--------NVVVIDASESDELRENPKALMETMAYAI------------------KEKKVTNTIIDSITGLYEHKEM-----MARQIVRQFFNFMKKYRQTGIFVSQ..................... 170
14 -9.670PF13476.6; Q6C910_YARLI/6-233; AAA domain  ali follow..  10  2.LSIQGIRSFDNTERETIT-------NKPLTLIVGQNGSGKTTIIECL-----ATTGDLPPHSKGGAFIHDPKICGEKEVLGQVKLAFTNVNGIQMICTRTMQVLVKKNTRQFKTLEGQLMASNNGERTTVSTRCAELDAQMPLYLGVSKSILDY--VIFCHQEESLWPLSEPAVLKKRFDEI................................. 172
15 -9.250PF13238.6; A0B5Y2_METTP/3-117; AAA domain  ali follow..  36  1..............................IALTGTPGTGKTTVSGLLP....................................................................................................................................................................... 19
16 -9.250PF13166.6; Q63PW4_BURPS/9-780; AAA domain  ali follow..  9  469......................................................................EAEGKKRVDRVKELRTQLRDEKRGAEQVNQYLGHFLGHGGLSLSAVEEANTATYRFQILRGDQAAYNLSEGECSLVAFCYFLAKKKLIIYIDDPISSLDSNHIFFVFSLIENYITK-EQLFISTHNLEFLKYLKR........... 631
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;