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Query: gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRDERFGKPYPNPVTGAVWIHAVSVGETRAAQSLIRELRRRFPDAPLLMTQMTPTGRETAQVLFPDAQCRYLPYDKKTWVRQFLREHRPMFGILMETEIWPNLMRECRRAGVPLFLANARLSEKSLNGYLKVRRLIRPAAASLTGCLAQTEADAARLAKLGAASVQVCGNTKYDIIPSEQMKTLAGQFEKRIGGRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTVFETAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNIIEPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKTLSSEGGGMQMQARVDGFIAQHRGAGARIAEAVREAVCGYRGRLast
1 -70.800PF04413.16; B3PCK7_CELJU/37-215; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)  ali follow..  39  1................................KRWAERFGFFSLVTHKKVVWIHTVSMGEFLGALPLIRQLLA-QPDVQIVVTTTTPTGSERVRAALGDVFHVYAPYDLPDAITRFLVRIKPALLVIMETELWPNTLAGCAKRHIPAILINARLSEKSARGYRRFSALTRPMLKQLTRAAIQNTADADRFMQLGLSNLSVTGNIKFDL....................................................................................................................................................................................................................... 179
2 -14.700PF04007.12; O26874_METTH/16-355; Protein of unknown function (DUF354 topsan)  ali follow..  14  3..................................................IWIDITNAPHVRFFRDVITYFQEE--GEDVIITA---RKFGDIHRLMKLFGFEFTSIGKHGVLSKFIAEQRPDVGLSKHS---IELPRVTFGLGIPSVYVLDNEHALAANKL---------TLPLCDNIIMPEVIDLWDIMKTGANRIRRYRGTSEIIHFQNFEYNENIFEDLNLKLERMRPEPSLASYLDADCHESVLTPIVEVLKDYANILIIPRFREQAEIFEGYDN-------------------VTIIKPPVDTFSLMKRCDL------VIGAGGTMNREAALLGTPVIS--YPGKPLSVDRFYIDNGLMYRSTDVDEIVNTALRLLVSKREQKKL---------RTDDLFRIIVDMVYEAAE..... 340
3 -12.400PF02350.19; Q89GN8_BRADU/78-406; UDP-N-acetylglucosamine 2-epimerase  ali follow..  13  9................................................DYFIIHSKQHYSEKLDAIFFSELDLPAPKYNLNVGSGGHANQTG---------------RILIELEPILVSEQPGILLVQDTNTVVAGALAAHKLHIKVGHIEAGLRSFDQTMPEESNRIIADHISDYLFAVTDLQVDQLKREGLPDSKIFKVGNTIVDASHRSQAEKTSQILRVLNLQEKGYYLLTSHRAANVDDPNALIEIIRLVARIPGKVYWPIHY---------------RTQKVLKEAKIDLPPNLIWTEPVGYSDFVKLLSNCIAV---ITDSGG----EACILGVPCVT---IRDRTERPETVDVGANVLVHRNAEAMLEALNRPIASWENPFGDGHTAERILD....................... 326
4 -11.900PF00534.20; BSHA_BACSU/185-352; Glycosyl transferases group 1  ali follow..  20  18.....................................................................................................................................................................................................................................VIHVSNFRKVKRVQDVIRVFRNIAGK-TKAKLLLVGDGPEK-STACELIRKYGL-------------EDQVLMLGNQDRVEDLYSISDL-KLLLSEKESFGLVLLEAMACGVPCI-GTNIGGIPEVIKN--VSGFLVDVGDVTAATARAMSILEDEQLSNRFTKAAIEM......................... 168
5 -11.900PF04230.13; Q2SIK8_HAHCH/17-318; Polysaccharide pyruvyl transferase  ali follow..  8  1........................................................NVGDDAIVIAIQKILQRANPDQSLSYTTLCS--DNRSREKFVTNYMHLYTVHSPSKWINLLQEYKNADLVVIGALEYLMLLPLAKIFRIPIVFLGVGADRHGMSFLTEN--YTRHTLKLADKILVRDNSAYEVIKSFNTEKINVTADVVFALYKDRPIEPTKSGI--GVCLRSTQRDDRALTRERLEVLAQYITKQSEEL-NCDIHLFPFIPYATDASGSKLEIDDEQAIMDKLYELLPNKERVVMNAHPEEIIEKLAQLNY-IISMRL-----HALILSGLAGTQFI............................................................................... 296
6 -11.400PF11440.8; GSTA_BPT4/14-368; DNA alpha-glucosyltransferase  ali follow..  7  2..........................................................GVTKFSLEQRDWFIKNGHEVTLV----YAKDKSFTRTSSHDHKSFSIPVILAKEYDKALKLVNDCDILIINSNNYKKLLDNIKPSIRVVVYQHDHSVLSL-----RRNLGLEETVRRADVIFSHSKEWYPETVSLFDDIEEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNINRIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILEMLERMSKSGFGYQLSKLNQKYLQRSEYTHLELGACGTIPVFWKSTGENLKFRVDLTSHDSGIIWNDMESTFERIKELSSDRA..................................... 355
7 -9.960PF04101.16; MURG_ENTFA/188-355; Glycosyltransferase family 28 C-terminal domain  ali follow..  15  11............................................................................................................................................................................................................................................................ALKINQAFEQAFPLFEEREYQVLYASGERYYQELQESLKFSEKKLTNISVQPYIDKMVEVMANTDLM-----VGRAGATSIAEFTALGLPAILIPSPYVTND-AQSLVKVGAVEMIPDAERLVAAIDDILLNNEKRQQMATASKGEGIPDAS................... 165
8 -9.440PF13528.6; H8MS55_CORCM/1-323; Glycosyl transferase family 1  ali follow..  10  4.................................................LYGVVGEGMGHATRSRVLLEALKEH--EVHIVVSAYEGNSVKKWQTVLQNLQGVAGWPQNVRQYFDLVEGFKPDVVV---SDFETFSYLFAKRHMLPVISVDNMQCTHDPALLAGHEESFSRAIVKAKLPGAFHYLTTTFFPPVRKRRTTLAPSI----------------------------------------LRPEILAAKPEAGEHLLVYQTATTNT--HLPEILKQSGVPCRVYGLRREDVVDGNLTYRPSEAGFIDDLRTARA------VVAGGGYTLMEAVYLRKPLLSIPVGGQFEQVALYLERLGYGMYVKSLDALKTFLSRV.......................................... 313
9 -9.050PF02684.15; LPXB_HAEIN/8-380; Lipid-A-disaccharide synthetase  ali follow..  12  3.......................................................LVAGEVSGGAGLIRQLKAHYPNARFI-PRMLAEGCETLVDMEELSVMGLAELKIRKNVIQTMLQEKPDVYIGIDAPDF-DVELKLKANGIKTI---------SPSVWAWRQNRIHKIAKATHQVLAFLPFEKAFYDKFNVPCRFIGHTMADAIPLKPNRAEACQTLQIDPAQRYLAILVGSRGSEVEFLALKTALLLKEQFPDLQFLVPLVNEKRRIQFETIKAKIT---------------PNLDLHLIDGNARQAMIAADATLLAS------GTAALEAMLCKSPMVV-PNLLANEMLVPEMIQEEC-----TPELLAEKLSVYLSDDESAVKNRHVLIQHFTDQCNADKQAAQAV.......... 373
10 -8.010PF04464.14; O26461_METTH/23-368; CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase  ali follow..  14  10.............................................PKRDNQILFESIPDFSDNPSQLYSYIKSLGTDYRMIWVVDSIRDDLDAPQYLRNTPSEFWQFLRSRYI-HLMIRAGNQVYL----NLW---------HGMPLKAMGYTEREPSI--------LLPGVCDENYYLIATSTIMRNALAAQDARRIHITGQPRNDKLLTEGRTMD--------DSRTIILYTPTYRDTGRDESIFSMPDYSEEKFQDFLFLMKLHP-------------------LDSGIRQRSGGNIRALDPSEDLYDILQGVDVLVTDYSSV------YFDFLLLDRPVIF-PDLEEYRRVLEPFEFWAPGPRVETFTDFLEELERCLEDDDYYRRERRIVNSLVNQDAGSSRRVYELV.......... 344
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.