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Query: gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MKNSFCGQFACCANGILLFFTEWLPMSLRTGILWRFERKVCLELVEMVRCRHECLISAYRQSAHPNLCISGGKNEICGLast
1 -7.250PF16239.5; Q97WR8_SULSO/16-95; Domain of unknown function (DUF4898 topsan)  ali follow..  21  29..................FFSTFLPYSVKYFVVISSDLPVKIIKESLIRAKDTLEVSCYITSKLPQKSM......... 79
2 -6.830PF00945.18; NCAP_EBLV2/11-428; Rhabdovirus nucleocapsid protein  ali follow..  19  226..........CSGLVSFTGFIRQINLTAKEAILYFFHKNFEEEIKRMFEPGQET--SPYSSNAVGHV........... 298
3 -6.590PF16991.5; I2H7J6_TETBL/1522-1677; Sir4 SID domain  ali follow..  17  88..................................TFLASTLIDLLDTGLIPYSSLEESYYVSGTNDVC.......... 121
4 -6.440PF15744.5; G1SII7_RABIT/10-368; Uncharacterized protein family UPF0492 topsan  ali follow..  16  1.....CGNFAVLVDLHIS--TSWFSEQKKEEVCLLLKETIDSRVKEYLEVRKQHKPSSPEFTRSNPLSLKGYGFQI.. 76
5 -6.080PF04020.13; R4PXK2_9BACT/2-110; Mycobacterial 4 TMS phage holin, superfamily IV  ali follow..  23  68......GLFTIIVNGFMVWISLKLAPGLQMTFWHSVLTGLVLSLVNYV.............................. 109
6 -6.020PF16923.5; A5DNH9_PICGU/50-285; Glycosyl hydrolase family 63 N-terminal domain  ali follow..  15  1..SLLWGPY---RSALYFGVRPRIPRSLLSGLMWYNID----GYGGVGSIRHFY-MGKANWIRYDPR--FGGTQVI.. 69
7 -5.970PF08401.11; Q89U10_BRADU/16-139; Domain of unknown function (DUF1738 topsan)  ali follow..  12  11........IVELEAGRVPWVQPWIPKNASTDRSYSGINVLLLWGSTIEHGYSGQSWLTFRQALSLGGYVRKGER.... 86
8 -5.950PF15724.5; L5JX75_PTEAL/24-275; TMEM119 family  ali follow..  28  61.............DGIVDFFRQYVMLIAVVGSL--------VFLLMFIVCRQKHKASAYYPSSFPK............ 110
9 -5.870PF12409.8; G1XUG4_ARTOA/163-285; P5-type ATPase cation transporter  ali follow..  11  15MGSTILTVLSVLTLGLFYLLLRWMP---------RWRVRLIGKPCPLRDCEWVVIENEWNE................. 66
10 -5.830PF11702.8; R8BWH1_TOGMI/90-591; Protein of unknown function (DUF3295 topsan)  ali follow..  26  424.................MLSTE-LTESLRRHLVW--ERSQKSSTANAVLKRRHTSHDVANLKQYPE............ 469
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 2 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.