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Query: gi|15675967|ref|NP_273093.1| peptidyl-prolyl cis-trans isomerase (NMB0027) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGLIIEDLQEGFGKEAVKGKEITVHYTGWLENGTKFDSSLDRRQPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGAHGAGGVIPPHATLIFEVELLKVYELast
1 -66.900PF00254.28; A0A0N4TXG0_BRUPA/14-105; FKBP-type peptidyl-prolyl cis-trans isomerase  ali follow..  49  2..............TFPKTGQTVTCHYVLTLENGEEVDSSRSRGKPFKFKIGAGEVIKGWDEGVAKMSVGQRAKLTVSSDLGYGSRGIPGAIPPNSTLIFDVELL.... 92
2 -33.500PF18023.1; K7IUU4_NASVI/4-120; BDBT FKBP like N-terminal  ali follow..  15  6.KLIKKEIIREGQFNKPTELSVCTIHVANPQSLDLSIEQMIDADSKKVIVIGDAHVDRYIERAIEMMSLNEHSLITVQFPPDRT-------RTETIILSLEVTLEKVD. 116
3 -8.500PF16109.5; R6AEQ5_9BACT/21-221; Domain of unknown function (DUF4827 topsan)  ali follow..  14  74.TGVYMQIVSKGDGEKIADDKRVLVRYTENIAGDSIQTSNGLQNDPDIVSVKSSAAPPAWLVPFTYVKLTAHVRLIVPGSY-----GQANASANVYPCFYDIT...... 200
4 -8.270PF14411.6; I0GP52_SELRL/2256-2337; A nuclease of the HNH/ENDO VII superfamily with conserved LHH  ali follow..  17  3.....LELAMSWNAPIGKDGKPIELHHVLQKEPGCMVEIESSIHS................................................................ 42
5 -7.670PF13729.6; F7YS53_VIBA7/48-300; F plasmid transfer operon, TraF, protein  ali follow..  155........FSFGITPKIQQLRTYKQNVSVKEFDLADYDKSETNDNAFNLDLGAVWLINDFRVGVAVKDLFAQSSYDLDTQVTISGGYVTEFF----TAAIDLD...... 253
6 -6.270PF07977.13; FABA_PSEAE/28-158; FabA-like domain  ali follow..  13  7...LMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKF----FGQVLPTAKKVTYNIHIKRTIN 108
7 -6.270PF04862.12; F2DPS4_HORVV/28-184; Protein of unknown function (DUF642 topsan)  ali follow..  28  1............................GLLPNGD-FRNGPDKSQMNGPVVTGKHAIPNWE................................................ 32
8 -6.130PF14250.6; K9TJF5_9CYAN/49-116; AbrB-like transcriptional regulator  ali follow..  17  10.RGIALDPEAKKSTRGREASYRVSVHQNGQLVIGSTYTQGLKPGDEFEIKLGYKHIH.................................................... 67
9 -5.520PF11766.8; G3ALS8_SPAPN/53-299; Cell-wall agglutinin N-terminal ligand-sugar binding  ali follow..  2...........................................................WEIQGSKIQPLDTFTLDLPCVFKFITDEPYIALTVGSTEYAHCYF..... 46
10 -5.500PF12444.8; F6XIA1_MONDO/22-100; Sox developmental protein N terminal  ali follow..  34  47.....................................PGEVDDRFPACIRDAVSQVLKGYDWSLVPMPV........................................ 78

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.