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Query: gi|15675970|ref|NP_273096.1| methionyl-tRNA synthetase (NMB0030) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHACHYCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTGFFIGYDNYYSTHSPENKQFSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCGTTYSPTELINPYSAVSGTKPELRESEHFFFKLGECADFLKAWTSGNNPHDGKPHLQAEALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNLCDRIGVDFDEYFKADSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLTVDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSDLVGKYVNIAARASGFIAKRFEGRLKDVADSELLAKLTAQSEAIAECYESREYAKALRDIMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPQTAANAAKFLNLEAITWANTRDTLGKHAINKYEHLMQRVEQKQVDDLIEANKQSIAAAAAPAAEEGKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIAASYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATADGKLKLLDVDTGAQPGDKVGLast
1 -125.000PF09334.11; SYM_CHLTE/8-409; tRNA synthetases class I (M)  ali follow..  33  1....TLVTTALPYANGPVHLGHLAGYLPADIYVRYKRLCGHDVIHIGGSDEHGVPITITADKEGISPQEVVDRYHTMNAEAFAKCGISFDYYGRTSGPVHHQTAREFFLEIEKKGIFVKKTEKQFFDPKAGRFLSDRYITGTCPVCKTPGANGDQCEQCGTHLSPTELIDPKSKLSDATPELRETLHWYFPLGRYQKQLEAFVERH-----TGDWRSNVVNYSRTWLNQGLADRAITRDLA-----WGISLPEAKGKVLYVWFDAVLGYISFTKEWAEKQGELWRRYWQ-DPETRIINFIGKDNVVFHTLMFPAILMAWNYELADNVPASEFMNFEGRKFSKSRNYAVYLGEFLER-FPADTLRYSIAMNY-PENKDTDFSWSDFQNRTNGELADTLGNFIKRSI........................................................................................................................................................................................................................................................................................ 402
2 -21.600PF01406.19; SYC_BACSU/15-314; tRNA synthetases class I (C) catalytic domain  ali follow..  16  11...KMYVCGPTVY--NYIHIGNARPAIVYDTVRNYLEYKGYDVQYVSNFTDVDDKLIKAANELGEDVPTISERFIKAYFEDVGALGCRKADLHPRVME-NMDAIIEFVDQLVKKGYAYE----------------------------------------------------------------SEGDVYFKTRAFEGY----LSQQSIDELRSGARIRVGEKKEDALDFALWKAAKEGEISWDSP-WGKGRPG--------W------HIECSAMVKKYLGDQID-----------IHAGGQDLTPHHENEIAQSEALTGKTFAKYWLHNGYINIDNEKMSKSLGNFVLVHDII-KQHDPQLLRFFMLSV----RHPINYSEELLENTKS....................................................................................................................................................................................................................................................................................................... 300
3 -21.400PF00133.22; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)  ali follow..  15  25.EGVFCIPAPPPNVTGALHIGHALTIAIQDSLIRYNRMKGKTVLFLPGFDHAGIATQSVVEKDRKTRHDY-EEYHSRIKNQIQKLGASYD----TLSPELTKSVEEAFVRLHDEGVIYRASRLVNWSVKLNTAISNLEVE-IIATTRPETIFGDTAEECGPEWQGMKRFDPTCSRSGDIIEPLLKPQWWVSQSEMAKDAIKVVRDGQITITPKSSEAEYFHWLGN---------IQDWCISRQL-WWGHRCPEQDEDVLDTWFSSGLWPFSTLGW--PEKTKDMETFYPFS-----MLETGWDILFF----WVTRMILLGLKLTKEVFCHSLVR-QGRKMSKSLGNVIDPLDVI-TGIKLDDLHAKLLQGNLDP-REVEKAKIGQKESYPNGIPQCGTDAMRFAL........................................................................................................................................................................................................................................................................................ 612
4 -16.500PF01921.18; Q5NP46_ZYMMO/15-368; tRNA synthetases class I (K)  ali follow..  14  21.EKGYILFETGYGPSGLPHIGTFNEVLRTTMVRRAYEILSDTTRLIAFSDDMGKPLSRIPDPFG-KYESFAHHNNAMLREFLDRFGFEYDFYSASEQYNSGRFNETLKDILRNYQKIMNIMLPTLREERRATYSPILPISEKSGIVLQVPVEVVDTEAGIIRFEDEGETVEQSILDGK----------------------------------------------------------------AKLQWKVDWA----RWKALGVD--------------------------------YEMAGKDLIDSVTQS--KITRVLGGRPPEGFNYEMFLDENGEKISKSKGNGIGLEEWF-RYGPEESLAFFAYRE----KKAKSLHLGVIPRAIDQDADKKLGNPVHHI......................................................................................................................................................................................................................................................................................... 350
5 -15.300PF01588.20; SYFB_SYNE7/45-149; Putative tRNA binding domain  ali follow..  23  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VVVGRVLEREQHPNADRLSVCQVEIGQEPVTIVCG------ASNVRADIWVAVATKLKPTKLRGVR-SEGMILGLTKESEGIHIFPEDAGLQAGQ... 104
6 -11.700PF08264.13; A3DDJ3_CLOTH/685-843; Anticodon-binding domain of tRNA  ali follow..  15  1....................................................................................................................................................................................................................................................................................................................................................................................................................................DKWALMKLNGLIKKVNDAYEKYEFHLMFHAIHNFCDMSNFYLDIIKD-RLYTSRADSKERRSAQTAMYEILEALVKMLAPVLAFTSEEVWQFMPHRSTNDPESVQLNY----------WPEPNEKYENAALKEKWDRIIEIRDVVSKALEIARTEKIIGHSLNAKVTI................................................................................................. 159
7 -10.000PF17032.5; J9D3W3_EDHAE/30-102; zinc-ribbon family  ali follow..  11  7.............................................................................................GNRINAVYRRNDYYFSICFLNLFRISKGTPYLSCNYCEASFGGHGTN-ICEDCRTAVPSQFKCPHCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 73
8 -9.730PF10083.9; Q3A032_PELCD/5-158; Uncharacterized protein conserved in bacteria (DUF2321 topsan)  ali follow..  14  5............................................................................................................AQICINGHVDYPQSNQKYCSDCGE------TITACPSCGSNIRGHYHCFNCGSPYPWTAIRLEAAAELADELDGLTTD----EKEKLKSSLPDLVKDGPKTVVAETRFKKIIKKAGADAYEGMKTILVD................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 145
9 -9.310PF07191.12; C4LC42_TOLAT/5-72; zinc-ribbons  ali follow..  14  1............................................................................................................................ITCPSCQQEGLPRFATTTCVHCAKQFNLVAYCPTCHAELERLQACGAVDYFCNSCNSMISKRQAEYK.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 68
10 -9.130PF12773.7; A4H9B2_LEIBR/373-437; Double zinc ribbon  ali follow..  15  1..............................................................................................................................................CQHCGEDIPRGSCCGTCGQPVQGAPSHRRVCPACEALSD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 55

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]