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current user: public |
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Query: gi|15675972|ref|NP_273098.1| hypothetical protein (NMB0032) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . | |||||||
# | Score | Template | Links and tools | %id | First | MEMKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGMIAVKKEKGNYFLNKIHVVTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKTDAAMKDKIIAHQKKCGQTAQAYRDARNALPSNQTYQQHLAAIEQLKRRFEAEFDELEKEIKCNGRSPALLL | Last |
1 | -18.300 | PF12992.7; F0R3P0_BACSH/23-114; Domain of unknown function, B. Theta Gene description (DUF3876 topsan) | ali follow.. | 26 | 1 | .................SCSESRDRLCGSWSSVEGKPD--VLIYKEGDAYKVTSGKTRKLKPETYLLVEENGNLFINTG-YRIDIAYNEAADVLTFSPGDYVR........................................................................ | 92 |
2 | -10.700 | PF11032.8; F6WK07_XENTR/1-188; ApoM domain | ali follow.. | 12 | 1 | MIHRIWHYFLYLYGLFLDCDSFPSQYLGQWY--------FVAAAATPGTRALETFTAMDNAEFSVRQCREEQKLDFRA-------AIRVKDGSCVPRKWIYLLPEGSTELRTEGHPDRLTQLFPFRCPHCIILKETDNSYARLLLYSRLPQLEEEFMEEFKNKSNCEGYTDILKI | 177 |
3 | -9.410 | PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan) | ali follow.. | 10 | 1 | MKKKFILSLTFIGISCFACLDDETKYVTQKKTNYP-------------AFAVAVNNVQTGTTSYYHGKIDQTTHKIENVITGVDYTLMDGASISPDPATFIQNWQKEQKVTVTTANNQSTTYTIVLPKYDETLKDIIFIDDF................................. | 140 |
4 | -8.680 | PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan) | ali follow.. | 13 | 1 | MNLKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAK........................................................................................................... | 70 |
5 | -8.230 | PF16308.5; Q830I7_ENTFA/134-311; Domain of unknown function (DUF4950 topsan) | ali follow.. | 11 | 54 | .......................ADFIGGW------------IPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQIMTFLLNNNDGTLTVNGQIYTYLGNITLEQLIERNNQTQQVFEQSEQQPPQNSDSREQIQNSKSDQPIYD........................ | 178 |
6 | -7.970 | PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein | ali follow.. | 18 | 2 | ......IVALFLGLILVSCSDDDDQ-----GGVIDTGIHKIVVEQSGD............................................................................................................................... | 38 |
7 | -7.830 | PF13987.6; A7MJH8_CROS8/25-130; YedD-like protein | ali follow.. | 18 | 8 | .......................AGLAGYWQSKGPQSELVLVVTPAGDTLDCRQWQRVIALPGKLMRRDDT---LYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTE................................................................. | 98 |
8 | -7.740 | PF12092.8; B8FMB6_DESAA/3-128; Protein of unknown function (DUF3568 topsan) | ali follow.. | 10 | 1 | .KALLALLCAIVLISTSSCAA-KGELVRSYPATYAKAVSVTNAVINELKISIDSKVDDGITTTFNGRRAGDKPVTIK--------MLDPKITQIGIRVGYVGVWDRQISETIHSHIQE......................................................... | 125 |
9 | -7.680 | PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan) | ali follow.. | 7 | 2 | .....FSFLTAAGLLFAGCHQPDELLPSVSRNGINSVTAQFYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDD-NVTVDPAVLYMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLS........ | 179 |
10 | -7.170 | PF16971.5; C9R2X1_AGGAD/1-167; Rough colony protein B, tight adherence - tad - subunit | ali follow.. | 8 | 1 | ..MRKLVITASIALASITAPVAISEFVNDTTVAQPVQNSEFNRTQLVDRYVLPDYSNVSYSNLFNSVIRDIGSNN-------------QKQINIIWRDATAKKAAMKIRTKLIKNGIASKSIYEKKAHKAKTYPIYIEVAQIAPKPAPCAYRTGEVVFWNSNETSC......... | 155 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |