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Query: gi|15675972|ref|NP_273098.1| hypothetical protein (NMB0032) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEMKQMLLAVGVVAVLAGCGKDAGGYEGYWREKSDKKEGMIAVKKEKGNYFLNKIHVVTGKEESLLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKTDAAMKDKIIAHQKKCGQTAQAYRDARNALPSNQTYQQHLAAIEQLKRRFEAEFDELEKEIKCNGRSPALLLLast
1 -18.300PF12992.7; F0R3P0_BACSH/23-114; Domain of unknown function, B. Theta Gene description (DUF3876 topsan)  ali follow..  26  1.................SCSESRDRLCGSWSSVEGKPD--VLIYKEGDAYKVTSGKTRKLKPETYLLVEENGNLFINTG-YRIDIAYNEAADVLTFSPGDYVR........................................................................ 92
2 -10.700PF11032.8; F6WK07_XENTR/1-188; ApoM domain  ali follow..  12  1MIHRIWHYFLYLYGLFLDCDSFPSQYLGQWY--------FVAAAATPGTRALETFTAMDNAEFSVRQCREEQKLDFRA-------AIRVKDGSCVPRKWIYLLPEGSTELRTEGHPDRLTQLFPFRCPHCIILKETDNSYARLLLYSRLPQLEEEFMEEFKNKSNCEGYTDILKI 177
3 -9.410PF16341.5; R5U6I7_9BACE/2-141; Domain of unknown function (DUF4971 topsan)  ali follow..  10  1MKKKFILSLTFIGISCFACLDDETKYVTQKKTNYP-------------AFAVAVNNVQTGTTSYYHGKIDQTTHKIENVITGVDYTLMDGASISPDPATFIQNWQKEQKVTVTTANNQSTTYTIVLPKYDETLKDIIFIDDF................................. 140
4 -8.680PF16408.5; R6U353_9BACE/1-123; Domain of unknown function (DUF5016 topsan)  ali follow..  13  1MNLKTMALLAVPATVAVSCKDDGMDVKFTDKGPEMTIESCATEAFMGDSVRFSIKLNDEFPLSTLKAK........................................................................................................... 70
5 -8.230PF16308.5; Q830I7_ENTFA/134-311; Domain of unknown function (DUF4950 topsan)  ali follow..  11  54.......................ADFIGGW------------IPQSDNLFFINADGTLTSITQSNVPLQNVSFSVDENGNQIMTFLLNNNDGTLTVNGQIYTYLGNITLEQLIERNNQTQQVFEQSEQQPPQNSDSREQIQNSKSDQPIYD........................ 178
6 -7.970PF14466.6; R6Y7E1_9BACT/10-135; PLAT/LH2 and C2-like Ca2+-binding lipoprotein  ali follow..  18  2......IVALFLGLILVSCSDDDDQ-----GGVIDTGIHKIVVEQSGD............................................................................................................................... 38
7 -7.830PF13987.6; A7MJH8_CROS8/25-130; YedD-like protein  ali follow..  18  8.......................AGLAGYWQSKGPQSELVLVVTPAGDTLDCRQWQRVIALPGKLMRRDDT---LYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTE................................................................. 98
8 -7.740PF12092.8; B8FMB6_DESAA/3-128; Protein of unknown function (DUF3568 topsan)  ali follow..  10  1.KALLALLCAIVLISTSSCAA-KGELVRSYPATYAKAVSVTNAVINELKISIDSKVDDGITTTFNGRRAGDKPVTIK--------MLDPKITQIGIRVGYVGVWDRQISETIHSHIQE......................................................... 125
9 -7.680PF16410.5; D4ILT1_9BACT/5-358; Domain of unknown function (DUF5018 topsan)  ali follow..  7  2.....FSFLTAAGLLFAGCHQPDELLPSVSRNGINSVTAQFYPTEGSDEITVEIPWFYPESSDDVVSGKMLDKMRISLNLDD-NVTVDPAVLYMNLNEDNYITVTDQLKQKKVYKVRGRIVKSKACLLEELSLPSQGLNAIIDQETKEVSLIAAGNIEPCTGTYRLS........ 179
10 -7.170PF16971.5; C9R2X1_AGGAD/1-167; Rough colony protein B, tight adherence - tad - subunit  ali follow..  8  1..MRKLVITASIALASITAPVAISEFVNDTTVAQPVQNSEFNRTQLVDRYVLPDYSNVSYSNLFNSVIRDIGSNN-------------QKQINIIWRDATAKKAAMKIRTKLIKNGIASKSIYEKKAHKAKTYPIYIEVAQIAPKPAPCAYRTGEVVFWNSNETSC......... 155
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.