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Query: gi|15675974|ref|NP_273100.1| hypothetical protein (NMB0034) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVLASLMCLGLGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMILWMKKAARSMKRQLQDSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLAAAVIGALIYQGGMRLNLAKFFRWTGAFLIVVAAGLLAGSLRALHEAGIWNALQDIVFDSSKYLHEDSPLGVLLGGFFGYTDHPTQGETLVWLLYLIPVITWFLCGSRPSETLTRKEELKLast
1 -80.100PF03239.14; FTR1_YEAST/7-321; Iron permease FTR1 family  ali follow..  18  2.VAVFFVVFRECLEAVIVISVLLSFLKQAIGEHDRALYRLGFIICLAIGAGFIGAYYSLQKDIFGSAEDLWEGIFCMIATIMISMMGIPMLRMNKSLVEIPHRKRDYFKIGFLSRRYAMFLLPFITVLREGLEAVVFVAGAGITTQGSAYPLPVVVGLICGGLVGYLLYYGASKSSLQIFLILSTSILYLISAGLFSRGAWYFENYRFNLASGKAVYHVNCCNPELDNGWDIFNALLGWQNTGYLSSMLCYNIYWLVLIIVLSLMIFEERRGH...... 314
2 -15.700PF16955.5; Q97V64_SULSO/1-207; Ferrous iron uptake permease, iron-lead transporter  ali follow..  18  6FLAALGISLLELTEAG---AIAAIYHNIYKNNLPFIYAVLGVAIVLIPTFTLGKLIYLV--------------YVLLASAVILFYFGYRLIRSARRSFKGIKKKGGEEKEEGLSVVFTVSAI-------EGLEASLVILALIPQS--SSAVMGAILASVLVVILTAILKSQVARIRLPHLKFVLSALLFSLGTLWISEVVFDIPDLILPL..................................................................... 193
3 -9.970PF01914.17; YCHE_ECOLI/8-210; MarC family integral membrane protein  ali follow..  8  3VYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTILQLFG-----ISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMA-----GPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLGINVITRIMGLLLMALGIEFIVTGIKGI............................................................................ 202
4 -8.480PF01169.19; F2NJ85_DESAR/103-177; Uncharacterized protein family UPF0016 topsan  ali follow..  12  1......................................................................................................................VIVTVTFFMAELGDKTMLSTVTLAASQNLMPVWLGSSLGMVLSDALAIWAGQ-GQRLPERALKIGAAVIFIAFG....................................................................................... 75
5 -8.190PF03596.13; Q9JXN6_NEIMB/16-206; Cadmium resistance transporter  ali follow..  11  9..................LIILMLFFAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIP---SKEILGLLGLIPILL-----------KVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKLAQVPSVGETLEKYSRWFVAVV--YLGLGIYILVENNSFD..................................................................... 186
6 -6.800PF11085.8; YQHR_BACSU/9-172; Conserved membrane protein YqhR  ali follow..  15  70...........SIILIGVISIGAAFLYFL---KRLKTMWPGILYGLVLWLLVFFVFNPIFPDVRTVTELTSDTIITTICIYLLYGLFV............................................................................................................................................................................................... 145
7 -6.540PF13000.7; E7K9I5_YEASA/17-559; Acetyl-coenzyme A transporter 1  ali follow..  11  2FYLLIMLYLAQGIPVGLAFGTVPFLLKSLAKETSFTSLGIFSMATYSLKIIWSPIVDSLYNKRIGRRRSWI--PVQFVSGFVLWALGWCISQGIIFDGVDDAFHNRGNGTLHSVSIKNLTWWFGLLVFLCATQDIAILSKESLSYASTAQTIGLNIGYFMSFTIFLSL---NSSDFANKYFRNIPLDHGFISLGGY................................................................................... 202
8 -6.190PF13493.6; F8GKK6_NITSI/400-506; Domain of unknown function (DUF4118 topsan)  ali follow..  13  12.....................................................................................................................TILAAGLLHIFDLSNVVMILLLTVVGISIKFGRGPGAWAAALSVMLFDFFFVPPRFSFSVSDVQYLFTFALMLLVALTIGQLAAKLRFE......................................................................... 100
9 -5.870PF11970.8; Q7SAB9_NEUCR/459-533; G protein-coupled glucose receptor regulating Gpa2 C-term  ali follow..  10  1................................................................TRNRERARRQLYALFAYPLVYIIVWIFPFLSHVGYD--------DKITPNDPQWILFVSMVSLGIQGVDCMLF.............................................................................................................................................. 66
10 -5.850PF01737.17; K9PX12_9CYAN/4-61; YCF9  ali follow..  11  1LFQLALVAL--GLSFLMVIGVPVAYASPTNWEQSKSLIYVGSFAWIALVIVVGIL................................................................................................................................................................................................................................ 54
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.