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Query: gi|15675975|ref|NP_273101.1|(removed signalp:1-19) hypothetical protein (NMB0035) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CQPPEAEKAAPAASGEAQTANEGGSVSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDKMTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEVKELVAKTKTFTEAVKAGDIEKAKSLFADTRVHYERIEPIAELFSELDPVIDAREDDFKDGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGGASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTDTNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLKLast
1 -25.500PF09375.10; Q0VT33_ALCBS/51-408; Imelysin  ali follow..  16  1.................................................................................................................................ALATYTDALAEARKLKTQIDALLAAPTEDSLTAARDAWRAARVPYMQSEVFRFG-DEWEGQVNAWPLDEG-GSEVNVATGYHAIEFLLWGQDLNGTLSVVTDLLINDLEVMVDEWRPEADSVENGLRKMLFGMGSLSLGELAGEHDCFSDNTHASHFYNGKGIRNVYPSLSDLVAANKPAIDNQLKADLEASRAALQGLVDSNKGIHFDQLIAPGNSEGAATVNAAIDTLVAQTTSI... 358
2 -19.700PF06525.11; SOXE_SULAC/49-198; Sulfocyanin (SoxE) domain  ali follow..  11  4.ISIPYSSSNKTVFLTIVVESSSNVNQFNFNGTSSGSLVIYIPAGTVIVKFINQESLPHNLVLLQNSTPTPDVNGISGGASAEGVWGPSAGDYMLVCGILGHAASGMWAVLVASNNVTAPYAV...................................................................................................................................................................................................................................................... 149
3 -18.900PF13473.6; B6XG39_9GAMM/6-110; Cupredoxin-like domain  ali follow..  20  5.......VFICALFSQSALSAEKYTVELEMKNGDLIPRVLEVPAKIIRIKITNTGTEPAEFESLQ----LRKEKVLAPGASSVVVIALKPGSYTFFDDFHLSHPKGE...................................................................................................................................................................................................................................................................... 102
4 -12.300PF00127.20; PLAS_SILLB/67-165; Copper binding proteins, plastocyanin/azurin family  ali follow..  20  1.....................AEVLLGSSDGGLAFVPSDLSIASGE-KITFKNNAGFPHNVVFDEDESMPEEDLLNAPGEEYSVTLT-EKGTYKFYCAP--HAGAGMVGKVTVN............................................................................................................................................................................................................................................................... 99
5 -8.050PF12690.7; C4L5A1_EXISA/43-141; Intracellular proteinase inhibitor  ali follow..  15  2...........DTEMAYDASAKTLSATISMTNPNEEAVDVTFNSSRFQLVVKKGDQTVFDYGSDYMFTESVIEEKWEANDKKVFDETLEPGEYSVEVIGLGQVD......................................................................................................................................................................................................................................................................... 99
6 -7.770PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  12  7............FSTCLSEDETRARLLVSKQ-----ILNKYLVEKLVRYTIFNVGGAATKVRLVDGGQPTAVVDRIAPQTNFTHVLVVRPGYFNFTAAEVSYKAVEESETLQLAVSSE........................................................................................................................................................................................................................................................... 125
7 -7.440PF04136.15; D7TC86_VITVI/115-262; Sec34-like family  ali follow..  8  2....................................................................................................................................................................................................................VNTLTERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRLLVE--------------KQRLIEFAEALRSKLNYFDELENVATSFYSPGNENFLPLLKRLDECISYVESNPQYAESSVYLVKFRQLQSRALGMIRSHVVSVLKSASSQ 148
8 -7.290PF06008.14; LAMA1_HUMAN/1575-1831; Laminin Domain I  ali follow..  10  13............................................................................................................................................................................PYGILSNLENTTKYLQESLLKENMQKDLGKIK-----LEGVAEET--QKKLTRMLASTQKVNRATERIFKESQDLAIAIERLQMSITEIMEKTTLNQTLDEDFLLPNSTLQNM---QQNGTSLLEIMQIR-----TQLHQNATLELKAAEDLLSQIQE--NYQKPLEELEVLKEAASHVLSKHNNELKAAEALV... 194
9 -7.080PF17111.5; G2X365_VERDV/2-211; Fungal N-terminal domain of STAND proteins  ali follow..  9  1..........................................................................................................................................................................................................................................ADGLSIASGVVALITFAFQSSTALYTTVRSFQS----------QDKTARALKTELTDLTAVLESLLETVSANPDINFEALKLPLYRCGKTCEEYGD---IARCTKHSSTPRPSFKGDISDFKEMLAGYKSTINI. 131
10 -6.930PF02024.15; G3WWV6_SARHA/23-167; Leptin  ali follow..  10  2.....................................................................................................................................................................................................................................IRKVQDDTKTLTKTIITR-------INDISHMYSISAKQRVTGLDFIPGLHPFQ----SLSDMDQTLAIYQQILSNLSSRNMVQISNDLENLRDLLHLLGSLKSCPFDEADGLSALGNLEGTLSRLQKSLYGMLQQLD.. 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.