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Query: gi|15675976|ref|NP_273102.1|(removed signalp:1-20) hypothetical protein (NMB0036) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AGAVGAIGGYLGGKKQGETAERTAESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPFGGGYFFVLPGVEKGGFLGQGLLGVLast
1 -103.000PF04261.12; Q9K1P5_NEIMB/60-410; Dyp-type peroxidase family  ali follow..  100  1.......................................QAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQGGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRDFSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPGAMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHFVEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGDITPKDSHIRLANPRDPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEEYISPFGGGYFFVLPGVEK........... 351
2 -8.440PF06778.12; L0EGN4_THECK/33-237; Chlorite dismutase  ali follow..  13  29.................................................................................................................................................YAIVGQKADILFMHLRETLDELQEVETAFNKSFADYTLPAYSYVSVVELSN-----------YMAQPGTDPMQNPEIVARLKPILP------------KTRHICMNKRRQGSDNWYMLPIDERREMM--------------------------------RSHGMT-----------------GRKYAGKVRQIITGSVGFWGVTLFADDPIQFKKLVYEMRFDEVSARFGEFG--------------YVGNLL... 205
3 -6.310PF09729.9; G9N6I3_HYPVG/10-171; Gti1/Pac2 family  ali follow..  9  1...........................................................................................................................................................................................................TFKGHVATTWDALL-EACLQGLINHVPRRPHDRERQELISSGNIFIYEEHASGIKRWTDGISWSPSRILGN-----RELDKPFPPGEKKRALKRKRGSQGVNKANSRSNSSAIDPNTISRDPERSLV-GSLVDSYLFKERGLVKKTISITFQGVPHHLVSYYS................................... 162
4 -5.790PF00868.20; F6YIG4_XENTR/4-124; Transglutaminase family  ali follow..  7  1.......................................................................................................................................................................................................................................................................................................DPQVIACDWYYAVNEKAHHTDVYESDDLVLRRGQPF--------------LTLMLNRPLQAEENILFIFETALKKGPSPSETSKTKVVFPLFRAENL......... 84
5 -5.300PF17484.2; M9X4V7_MANHA/45-175; N-Lobe handle Tf-binding protein B  ali follow..  13  1..............................................................................................................................................................................................................SLQDDNSNARRTVSASETEALLQP-----------GFGFSAKIPRRNLFPQGKEDVAPIGDIKEITG-------------DLTKIPYEEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEGYVY--YLGI................................................ 128
6 -5.160PF04764.12; YCY4_EUGLO/121-253; Protein of unknown function (DUF613 topsan)  ali follow..  11  3........................................................................................................................................................................................................................................................YCRKLKDD-SYWEKFPFNEIPIFVNDKKVG-DKLKTTKNLTKVEYYLLDIFWFGPL-----KIEASEHYEKIMRQIKDRNKKYMCLYYEKIINGINIIFIEYKKFLNNDYSIKEMINVEHILTIYV........................... 131
7 -5.150PF08336.11; B5DQ23_DROPS/33-164; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region  ali follow..  11  5...........................................................................................................................................................LLNLFELEREFMDNFIVYADVLQEKVDNLKMYIDSLDRGTHENHKEREGF------VSNPL----------------------------NAFGLIRRLHQEWPKWQNYTKKPLGV-------------------AQLTAMEELLSKAPEPFDMTES---------LKSMDRIERAYD----PASHIARGLL....................................................... 130
8 -5.040PF01531.16; A8K2L2_HUMAN/21-334; Glycosyl transferase family 11  ali follow..  16  133.....................................................................................................................................................................................................................................................SWTFYHHLRQEILQLHDHVREEAQKFLRG------------------LQVNGSRPGTFVGVHVRRGD-HVMPKVWKGVVADRRY-LQQALDWFRARYSSLIFVVTSNGMA---------WCRENI----DTSHGDVVFAGDGIEGSPAKDFALLTQ 260
9 -5.040PF04563.15; RPB2_CAEEL/45-448; RNA polymerase beta subunit  ali follow..  16  1....................................................................................................................................................................................................................................................G-------VRQQLDSFDEFVQMNVQRIV----EDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMLRNLTYASPLKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDP---GGYFVI---NGSEKVL....... 156
10 -4.970PF15432.6; F2I912_AERUA/17-140; Accessory Sec secretory system ASP3  ali follow..  12  10.............................................................................................................................................................................................................................................................................................ENPDHIHFKNTLMPSGERITSWSSRSVFQTTKDSAKLPLLTRGESYQLIFQGKTVPEGSIFFISF---FDYYGGPIEEYYLRTPSDYFTVPDTYNYYEI................. 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.