current user: public

If you have questions about the server, please let us know.

Query: gi|15675977|ref|NP_273103.1| phnA protein (NMB0037) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKALast
1 -38.600PF03831.14; B9DUH2_STRU0/44-111; PhnA domain  ali follow..  73  1..........................................VRDSNGNLLSDGDTVTVIKDLKVKGAPKDIKQGTRVKNIRLVEGDHNIDCKIDGGAMKLKSEFVKKL 68
2 -17.200PF08274.12; Q88Q12_PSEPK/3-32; PhnA Zinc-Ribbon  ali follow..  80  1.TLPPCPKCNSEYTYEDGTQLICPECAHEWS.............................................................................. 30
3 -8.970PF05417.11; POLN_HEVCH/432-592; Hepatitis E cysteine protease  ali follow..  15  72...............................EGSDVDPAESAISDISGSYVVPGTALQPLYQALDLPAEIVARAGRLTATVKVSQVDGRIDCETLLGNKTFRTSFVDGA 149
4 -7.860PF18868.1; V7CHV4_PHAVU/848-973; Zinc finger C2H2-type, 3 repeats  ali follow..  12  1.....CAICLDSFTNEQCMLLQCIPCGSHFGNAEQLWQHVLSVHPVDFKPSKAPEPQTLSTGEDSPVKHDPGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGR.. 119
5 -7.420PF17998.1; D4BSB5_BIFBR/1200-1377; Cell surface antigen I/II C2 terminal domain  ali follow..  15  16...........................................VSIDGKTMLLGDTG----NYVVTLDLKQTNNAYRVWKAGITDDFDDEHLAIDGTKIEVLDS..... 72
6 -7.340PF07191.12; C4LC42_TOLAT/5-72; zinc-ribbons  ali follow..  20  2....TCPSCQQEGLDPRFATTTCVHCAKQFNLVAYCPTCHAELERLQA............................................................. 45
7 -7.110PF08063.12; K1QLU6_CRAGI/271-323; PADR1 (NUC008) domain  ali follow..  23  12.ALEKCPECKEGQLVYSGHGYNCTGSVTEWTKCMYITKI...................................................................... 49
8 -7.030PF14206.6; F6AIT0_PSEF1/4-78; Cysteine-rich CPCC  ali follow..  17  2....QCPCCDYFTLAVGEDYEICAVCF--WENDYFGIEEPDLESGANHG--------LTIRQARANFATFGACHPSMVKNVIRPEQRE..................... 75
9 -6.990PF01541.24; UVRC_FRATT/22-97; GIY-YIG catalytic domain  ali follow..  22  5.........................................RMLDKHGEIIYVGKA----KNLKNRVNSYFSKGAKDSKTLMMVEQIARIETPSDYEAYLLENNLIKQ. 70
10 -6.400PF15731.5; A1VWM6_POLNA/1-131; Antitoxin component of bacterial toxin-antitoxin system, MqsA  ali follow..  15  2....KCPCCGATATIPAVTGDFCPACGEVILNREHGDRYSELLGQVNAAYIDPDYIARVRKKLDLDQRQAAEIFGGGVNAFSRYENGKTRPSLALVKLLKVLER..... 122

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]