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Query: gi|15675977|ref|NP_273103.1| phnA protein (NMB0037) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVRDANGAVLQNGDTVILIKDLKVKGSSMVIKQGTKVKGIRLQEGDHNIGCKIDGSAMNLKSEFVKKALast
1 -38.600PF03831.14; B9DUH2_STRU0/44-111; PhnA domain  ali follow..  73  1..........................................VRDSNGNLLSDGDTVTVIKDLKVKGAPKDIKQGTRVKNIRLVEGDHNIDCKIDGGAMKLKSEFVKKL 68
2 -17.200PF08274.12; Q88Q12_PSEPK/3-32; PhnA Zinc-Ribbon  ali follow..  80  1.TLPPCPKCNSEYTYEDGTQLICPECAHEWS.............................................................................. 30
3 -8.970PF05417.11; POLN_HEVCH/432-592; Hepatitis E cysteine protease  ali follow..  15  72...............................EGSDVDPAESAISDISGSYVVPGTALQPLYQALDLPAEIVARAGRLTATVKVSQVDGRIDCETLLGNKTFRTSFVDGA 149
4 -7.860PF18868.1; V7CHV4_PHAVU/848-973; Zinc finger C2H2-type, 3 repeats  ali follow..  12  1.....CAICLDSFTNEQCMLLQCIPCGSHFGNAEQLWQHVLSVHPVDFKPSKAPEPQTLSTGEDSPVKHDPGNSAPLENNSENTGGFRKFVCRFCGLKFDLLPDLGR.. 119
5 -7.420PF17998.1; D4BSB5_BIFBR/1200-1377; Cell surface antigen I/II C2 terminal domain  ali follow..  15  16...........................................VSIDGKTMLLGDTG----NYVVTLDLKQTNNAYRVWKAGITDDFDDEHLAIDGTKIEVLDS..... 72
6 -7.340PF07191.12; C4LC42_TOLAT/5-72; zinc-ribbons  ali follow..  20  2....TCPSCQQEGLDPRFATTTCVHCAKQFNLVAYCPTCHAELERLQA............................................................. 45
7 -7.110PF08063.12; K1QLU6_CRAGI/271-323; PADR1 (NUC008) domain  ali follow..  23  12.ALEKCPECKEGQLVYSGHGYNCTGSVTEWTKCMYITKI...................................................................... 49
8 -7.030PF14206.6; F6AIT0_PSEF1/4-78; Cysteine-rich CPCC  ali follow..  17  2....QCPCCDYFTLAVGEDYEICAVCF--WENDYFGIEEPDLESGANHG--------LTIRQARANFATFGACHPSMVKNVIRPEQRE..................... 75
9 -6.990PF01541.24; UVRC_FRATT/22-97; GIY-YIG catalytic domain  ali follow..  22  5.........................................RMLDKHGEIIYVGKA----KNLKNRVNSYFSKGAKDSKTLMMVEQIARIETPSDYEAYLLENNLIKQ. 70
10 -6.400PF15731.5; A1VWM6_POLNA/1-131; Antitoxin component of bacterial toxin-antitoxin system, MqsA  ali follow..  15  2....KCPCCGATATIPAVTGDFCPACGEVILNREHGDRYSELLGQVNAAYIDPDYIARVRKKLDLDQRQAAEIFGGGVNAFSRYENGKTRPSLALVKLLKVLER..... 122
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.