current user: public
If you have questions about the server, please let us know.

Query: gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58], from N.meningitidis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst TYQDGNGKTAVRQKYPAGTPVYYQDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNRLast
1 -6.130PF09489.10; S6BBE6_PSERE/11-61; Probable cobalt transporter subunit (CbtB)  ali follow..  22  20.................GLALVYFAGFSHIEAVHNAAHDTRHSA......................... 46
2 -6.050PF12686.7; K9XG69_9CHRO/9-227; Protein of unknown function (DUF3800 topsan)  ali follow..  12  3.YLDDSGSPKPNPK--DQCPFFGMGGVLINRGHEQIIEALVLEFKQRWNIAVDIPLHGSEIRSKK.... 64
3 -5.900PF03319.13; B7JVW1_CYAP8/1-83; Ethanolamine utilisation protein EutN/carboxysome  ali follow..  21  52.................DEWVLVSRGSAARIEDGQENRPLDAMVV........................ 79
4 -5.770PF08316.11; R8BJP7_TOGMI/139-271; Pal1 cell morphology protein  ali follow..  30  13.................GTGLFHHDGPFHRNKNGRRNAPM............................. 40
5 -5.680PF14124.6; C0NMC5_AJECG/12-190; Domain of unknown function (DUF4291 topsan)  ali follow..  28  2..........IRAQYTPTTITVYQ--AYSPA--------IANAAVAAGKFVPPFRRGRMTWIKPSF... 47
6 -5.610PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE  ali follow..  17  61........TASIVAGQVGSAYAAEIGAMQISEQIDALYPINYLVIPR...................... 104
7 -5.430PF04544.12; UL20_PSHV1/59-243; Herpesvirus egress protein UL20  ali follow..  14  44.AKSCTGHGAMVTGLTACTGAYAIASLLCSFVVYYNVRTDNMPFGTYTK.................... 91
8 -5.320PF09296.11; Q9FCK2_STRCO/46-141; NADH pyrophosphatase-like rudimentary NUDIX domain  ali follow..  15  59.......................LPGRMDQSARPAGLREAGLLLSPRDAGLMAHAVALENW........ 96
9 -5.300PF02744.17; GAL7_KLULA/195-363; Galactose-1-phosphate uridyl transferase, C-terminal domain  ali follow..  14  7KYEHQHGAH-VNLELREKERIVCENDSFLVVVPYWAVWPFETMVLSKRRIPSLNQ.............. 65
10 -5.140PF11992.8; Q1LH80_CUPMC/17-345; Domain of unknown function (DUF3488 topsan)  ali follow..  7  186..SEPIGRTGISDTMKPGSGKLIRSPDVAFRVDFVGEAPSPASLY---RAFVLWDYDGETWRPARSRSV 251
FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 2 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.