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current user: public |
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Query: gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58], from N.meningitidis |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 | |||||||
# | Score | Template | Links and tools | %id | First | MVEGQKSAVTEYYLNHGEWPGDNSSAGVATSSEIKGKYVKSVEVKNGVVTAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVTRDKAKDDAVTAATGKGTANINTKHLPSTAPTRKSTPN | Last |
1 | -29.200 | PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament) | ali follow.. | 12 | 11 | ELAAGKTAVDAALFEGKEPVLQANNADTSKEDMSNVELGGFSATSSAGTITGTLGTRANKDITGAKIMQNRAADGV---WSCTID---------------GSAATGWKDKFIPTGC........ | 122 |
2 | -7.630 | PF08224.11; Q8LHX1_ORYSJ/99-327; Domain of unknown function (DUF1719 topsan) | ali follow.. | 10 | 8 | VAHATKSLISSIFHGNIDEPIRSAVRRFEWFADGANDFLRSVEFGGTPRRYLFFDPLIGRLLAGETLEYKLVQGNNQHLFWIRPNNTAERGVEAKLIFVYNDESVPVNNFFLGMMLQLSECTN. | 130 |
3 | -6.480 | PF14430.6; H5X666_9PSEU/12-139; Immunity protein Imm1 | ali follow.. | 23 | 103 | .WPTVRQAVHDYVASGGARPDG...................................................................................................... | 123 |
4 | -6.350 | PF18038.1; H2T8R1_TAKRU/36-133; FERM N-terminal domain | ali follow.. | 9 | 1 | .......KILKVCFSTNNSLGKNFKLVKCDSSWQVRAIIRSI--------LNCGRLGPDIKHVGCYGLLLKHLKSDELHWLHPDLTVEEVEQRYESHHVEAEWRYDLRIRYVP........... | 98 |
5 | -6.100 | PF16750.5; Q4KDB2_PSEF5/38-148; Sensor domain of 2-component histidine kinase | ali follow.. | 9 | 2 | LDPADRQYLASYAQQAEHAWRQGGVAAV-------DEFQRQLATREDTWVAVI--GDRLQSLGSTPLEASHLTFMRKLDWPMSQDELPYVSIEFPEHPEQGRLVLQLPERLLP........... | 111 |
6 | -6.060 | PF02019.18; W5KAT6_ASTMX/58-185; WIF domain | ali follow.. | 18 | 2 | .....................................FMSEEEVKKDAELYYVRDDVVNNYALSFILPVPSETNSLHFTWHSKSKVDYKLGFHVENPAAMDQPQSNISTQEVPRTCSGKVDGE. | 101 |
7 | -5.940 | PF08334.11; Q0K5X7_CUPNH/46-154; Type II secretion system (T2SS), protein G | ali follow.. | 16 | 17 | .ISSVMQALKLYRLDNSRYPTTEQGL.................................................................................................. | 41 |
8 | -5.880 | PF02010.15; Q6IVD6_STRPU/655-1134; REJ domain | ali follow.. | 10 | 43 | .TDLTTLYVPAFTLEYGTY--HVTINLRDGSVGVNKNDQTYIRVVESPLYAVINGGSSRAIGWYRDIYMDGSLSKDLFSWFCRRSNET.................................... | 141 |
9 | -5.810 | PF16541.5; L2GD02_COLGN/38-169; Alternaria alternata allergen 1 | ali follow.. | 8 | 84 | ..............................................................................SWTCNDDPKYPARYTAKGGAV------------ADLSCEETSWQNL | 117 |
10 | -5.790 | PF11486.8; Q65MK1_BACLD/1-121; Protein of unknown function (DUF3212 topsan) | ali follow.. | 15 | 15 | ....ISDLVKQIFSREGHQEADTHRFESFAARRINIDYVFSIIMNIGDPEERRTASSTEDLLSSYLLSLLSFITKDMFQ----------YSRENANQYLLNERNADVFHLFLPDSV........ | 118 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |